Os06g0701100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Eukaryotic initiation factor 4A (eIF4A) (eIF-4A).
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Os06g0701100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Eukaryotic initiation factor 4A (eIF4A) (eIF-4A).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.32 | 0.287 | 13.8 | 0.502 | 0.189 | 0.673 | 0.463 | -0.379 | 0.296 | 20.5 | 20.5 | 2801 | -- | -- |
| 37.55 | 0.285 | 13.7 | 0.578 | 0.183 | 0.722 | 0.467 | -- | 0.314 | 20.4 | 20.6 | 2735 | -- | -- |
| 38 | 0.287 | 13.8 | 0.487 | 0.188 | 0.675 | -- | -0.388 | 0.294 | 20.6 | 20.6 | 2811 | -- | -- |
| 38.27 | 0.288 | 13.7 | 0.559 | 0.187 | 0.735 | -- | -- | 0.314 | 20.5 | 20.4 | 2760 | -- | -- |
| 39.92 | 0.294 | 13.8 | 0.495 | -- | 0.67 | -- | -0.365 | 0.292 | -- | 20.6 | 2716 | -- | -- |
| 49.21 | 0.329 | 13.7 | 0.975 | 0.19 | -- | 0.488 | -- | 0.512 | 20.8 | -- | -- | -- | -- |
| 49.99 | 0.331 | 13.7 | 0.958 | 0.188 | -- | -- | -- | 0.511 | 21.3 | -- | -- | -- | -- |
| 40.16 | 0.295 | 13.7 | 0.564 | -- | 0.724 | -- | -- | 0.314 | -- | 20.4 | 2695 | -- | -- |
| 41.65 | 0.301 | 13.7 | -- | 0.176 | 0.95 | -- | -- | 0.209 | 21.3 | 19 | 21666 | -- | -- |
| 52.04 | 0.337 | 13.7 | 0.959 | -- | -- | -- | -- | 0.51 | -- | -- | -- | -- | -- |
| 74.17 | 0.403 | 13.7 | -- | 0.189 | -- | -- | -- | 0.405 | 21.6 | -- | -- | -- | -- |
| 43.28 | 0.306 | 13.8 | -- | -- | 0.963 | -- | -- | 0.193 | -- | 19.06 | 21184 | -- | -- |
| 76.29 | 0.408 | 13.7 | -- | -- | -- | -- | -- | 0.404 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.22 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 9 |
| 6 | 37.31 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 9 |
| 21 | 37.42 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 9 |
| 25 | 37.46 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 63 | 37.62 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 6 |
| 82 | 37.68 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 96 | 37.72 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 116 | 37.77 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |
| 161 | 37.88 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 200 | 37.98 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 209 | 38.00 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 220 | 38.02 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 234 | 38.04 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 258 | 38.09 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 407 | 38.35 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 595 | 38.68 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 701 | 38.80 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 771 | 38.87 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 841 | 38.93 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 864 | 38.95 | temperature | 20 | 4320 | > th | dose independent | rect. | 23 | 23 |
| 921 | 39.00 | temperature | 20 | 4320 | < th | dose independent | rect. | 23 | 23 |