Os06g0700300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0700300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 155.7 | 0.586 | 7.77 | 1.94 | 1.62 | 1.15 | 0.792 | 0.753 | 0.823 | 19.8 | 21.21 | 731 | -- | -- |
| 156.54 | 0.583 | 7.77 | 1.86 | 1.58 | 1.07 | 1.03 | -- | 0.831 | 19.9 | 21.21 | 628 | -- | -- |
| 157.22 | 0.584 | 7.76 | 2.01 | 1.62 | 1.15 | -- | 1.03 | 0.837 | 19.7 | 21.37 | 740 | -- | -- |
| 159.77 | 0.589 | 7.79 | 1.78 | 1.59 | 1.11 | -- | -- | 0.786 | 19.8 | 21.3 | 616 | -- | -- |
| 292.06 | 0.796 | 7.75 | 1.9 | -- | 1.57 | -- | 1.25 | 0.688 | -- | 21.3 | 709 | -- | -- |
| 198.57 | 0.661 | 7.73 | 2.17 | 1.81 | -- | 1.12 | -- | 1.08 | 20 | -- | -- | -- | -- |
| 202.24 | 0.666 | 7.73 | 2.14 | 1.81 | -- | -- | -- | 1.08 | 19.9 | -- | -- | -- | -- |
| 277.51 | 0.776 | 7.78 | 1.68 | -- | 1.42 | -- | -- | 0.623 | -- | 25.29 | 619 | -- | -- |
| 185.22 | 0.634 | 7.91 | -- | 1.8 | 1.77 | -- | -- | 0.281 | 19.9 | 20.3 | 43520 | -- | -- |
| 380.88 | 0.912 | 7.69 | 2.12 | -- | -- | -- | -- | 1.06 | -- | -- | -- | -- | -- |
| 322.58 | 0.84 | 7.78 | -- | 1.8 | -- | -- | -- | 0.842 | 20 | -- | -- | -- | -- |
| 353.04 | 0.875 | 7.82 | -- | -- | 1.7 | -- | -- | 0.46 | -- | 26.36 | 643 | -- | -- |
| 499.14 | 1.04 | 7.74 | -- | -- | -- | -- | -- | 0.821 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 153.30 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 11 |
| 3 | 153.64 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 10 |
| 14 | 154.59 | temperature | 25 | 720 | < th | dose dependent | sin | 12 | NA |
| 34 | 155.93 | temperature | 20 | 270 | > th | dose independent | rect. | 13 | 18 |
| 37 | 156.00 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 7 |
| 41 | 156.09 | temperature | 20 | 270 | > th | dose independent | rect. | 12 | 21 |
| 80 | 157.64 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 11 |
| 87 | 157.82 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 13 |
| 107 | 158.25 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 10 |
| 124 | 158.51 | temperature | 20 | 720 | > th | dose independent | sin | 12 | NA |
| 156 | 158.86 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 7 |
| 160 | 158.90 | temperature | 20 | 720 | < th | dose independent | sin | 12 | NA |
| 205 | 159.34 | temperature | 15 | 720 | > th | dose dependent | sin | 10 | NA |
| 222 | 159.45 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 22 |
| 242 | 159.58 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 5 |
| 257 | 159.68 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 14 |
| 263 | 159.74 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 269 | 159.77 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 13 |
| 273 | 159.79 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 304 | 160.05 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 308 | 160.12 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 315 | 160.19 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 3 |
| 336 | 160.29 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 384 | 160.55 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 405 | 160.65 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 482 | 161.04 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 2 |
| 568 | 161.52 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 21 |
| 709 | 162.19 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 17 |
| 894 | 162.92 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 23 |