Os06g0699700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Aminodeoxychorismate synthase/glutamine amidotransferase.
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Os06g0699700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Aminodeoxychorismate synthase/glutamine amidotransferase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 69.69 | 0.392 | 10.6 | -0.118 | 2.96 | -0.703 | 1.1 | 0.75 | -0.0894 | 4.7 | 20.2 | 1659 | -- | -- |
| 70.21 | 0.39 | 10.7 | -0.211 | 2.96 | -0.907 | 1.08 | -- | -0.106 | 4.68 | 19.58 | 1594 | -- | -- |
| 72.27 | 0.396 | 10.6 | -0.00328 | 3.01 | -0.656 | -- | 1.07 | -0.0634 | 4.63 | 19.64 | 2733 | -- | -- |
| 73.17 | 0.398 | 10.7 | -0.254 | 2.98 | -0.89 | -- | -- | -0.134 | 4.66 | 19.7 | 1490 | -- | -- |
| 519.16 | 1.07 | 10.7 | -0.225 | -- | -0.99 | -- | -0.0646 | -0.0679 | -- | 19.64 | 2733 | -- | -- |
| 83.75 | 0.429 | 10.7 | -0.58 | 2.96 | -- | 1.17 | -- | -0.29 | 4.7 | -- | -- | -- | -- |
| 87.26 | 0.437 | 10.7 | -0.587 | 2.97 | -- | -- | -- | -0.296 | 4.66 | -- | -- | -- | -- |
| 289.43 | 0.792 | 10.7 | -0.0292 | -- | -1.98 | -- | -- | -0.175 | -- | 27 | 326 | -- | -- |
| 74.18 | 0.401 | 10.6 | -- | 2.98 | -0.963 | -- | -- | -0.0847 | 4.64 | 19.3 | 2818 | -- | -- |
| 555.15 | 1.1 | 10.7 | -0.473 | -- | -- | -- | -- | -0.219 | -- | -- | -- | -- | -- |
| 96.33 | 0.459 | 10.7 | -- | 2.96 | -- | -- | -- | -0.231 | 4.66 | -- | -- | -- | -- |
| 280.75 | 0.78 | 10.6 | -- | -- | -2.09 | -- | -- | 0.148 | -- | 27.07 | 325 | -- | -- |
| 561.06 | 1.11 | 10.7 | -- | -- | -- | -- | -- | -0.166 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.86 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 17 |
| 11 | 63.34 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 14 |
| 14 | 63.45 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 15 | 63.45 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 16 |
| 18 | 63.52 | temperature | 10 | 270 | > th | dose dependent | sin | 2 | NA |
| 26 | 63.68 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 13 |
| 28 | 63.70 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 11 |
| 57 | 64.28 | temperature | 10 | 720 | > th | dose dependent | sin | 7 | NA |
| 76 | 64.49 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 9 |
| 77 | 64.50 | temperature | 20 | 720 | > th | dose independent | sin | 7 | NA |
| 88 | 64.56 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 6 |
| 300 | 66.34 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 17 |
| 412 | 67.02 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 543 | 67.87 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 589 | 68.05 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 669 | 68.34 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 753 | 68.67 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 15 |
| 780 | 68.74 | humidity | 90 | 14400 | < th | dose independent | sin | 5 | NA |
| 809 | 68.80 | humidity | 90 | 14400 | < th | dose independent | rect. | 2 | 11 |
| 827 | 68.83 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 13 |
| 836 | 68.84 | humidity | 90 | 14400 | > th | dose dependent | sin | 2 | NA |
| 876 | 68.90 | humidity | 90 | 14400 | > th | dose independent | rect. | 24 | 17 |
| 906 | 68.95 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 8 |
| 916 | 68.96 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 933 | 68.99 | humidity | 90 | 14400 | > th | dose independent | sin | 4 | NA |
| 959 | 69.03 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 978 | 69.06 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 990 | 69.08 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 5 |
| 996 | 69.08 | humidity | 80 | 14400 | > th | dose dependent | rect. | 2 | 7 |