Os06g0699400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : MAP kinase 2.
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Os06g0699400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : MAP kinase 2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66.24 | 0.382 | 11.1 | 0.1 | 1.18 | 1.1 | 0.0695 | 0.191 | 0.113 | 1.66 | 50.86 | 1337 | -- | -- |
| 66.21 | 0.379 | 11.1 | 0.125 | 1.21 | 1.12 | 0.071 | -- | 0.116 | 1.64 | 49 | 1308 | -- | -- |
| 66.19 | 0.379 | 11.1 | 0.105 | 1.21 | 1.12 | -- | 0.13 | 0.11 | 1.64 | 49 | 1308 | -- | -- |
| 66.2 | 0.379 | 11.1 | 0.127 | 1.23 | 1.15 | -- | -- | 0.114 | 1.6 | 48.99 | 1281 | -- | -- |
| 91.26 | 0.447 | 11.1 | 0.0686 | -- | 1.11 | -- | -0.256 | 0.167 | -- | 65.91 | 10 | -- | -- |
| 95.69 | 0.459 | 11.1 | 0.0534 | 1.04 | -- | -0.114 | -- | 0.0686 | 1.6 | -- | -- | -- | -- |
| 95.74 | 0.458 | 11.1 | 0.0572 | 1.04 | -- | -- | -- | 0.0694 | 1.59 | -- | -- | -- | -- |
| 91.49 | 0.447 | 11.1 | 0.0588 | -- | 1.1 | -- | -- | 0.165 | -- | 65.91 | 10 | -- | -- |
| 66.59 | 0.38 | 11.1 | -- | 1.24 | 1.15 | -- | -- | 0.103 | 1.6 | 51 | 1274 | -- | -- |
| 162.34 | 0.595 | 11.1 | 0.0992 | -- | -- | -- | -- | 0.0922 | -- | -- | -- | -- | -- |
| 95.83 | 0.458 | 11.1 | -- | 1.04 | -- | -- | -- | 0.063 | 1.59 | -- | -- | -- | -- |
| 91.54 | 0.447 | 11.1 | -- | -- | 1.1 | -- | -- | 0.155 | -- | 66 | 34 | -- | -- |
| 162.6 | 0.595 | 11.1 | -- | -- | -- | -- | -- | 0.0812 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.25 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 9 |
| 13 | 61.23 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 22 | 61.56 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 10 |
| 41 | 62.12 | humidity | 80 | 1440 | > th | dose independent | sin | 2 | NA |
| 181 | 65.90 | humidity | 50 | 1440 | > th | dose dependent | rect. | 2 | 17 |
| 185 | 65.94 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 186 | 65.94 | humidity | 50 | 1440 | > th | dose dependent | rect. | 2 | 19 |
| 200 | 66.05 | humidity | 50 | 1440 | > th | dose dependent | sin | 1 | NA |
| 207 | 66.09 | humidity | 90 | 1440 | < th | dose dependent | rect. | 2 | 15 |
| 208 | 66.09 | humidity | 90 | 1440 | < th | dose dependent | rect. | 2 | 17 |
| 224 | 66.16 | humidity | 90 | 1440 | < th | dose dependent | rect. | 2 | 19 |
| 227 | 66.19 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 243 | 66.26 | humidity | 90 | 1440 | < th | dose dependent | sin | 1 | NA |
| 388 | 66.75 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 414 | 66.81 | humidity | 90 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 415 | 66.82 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 21 |
| 433 | 66.84 | humidity | 50 | 1440 | > th | dose dependent | rect. | 9 | 23 |
| 450 | 66.88 | humidity | 50 | 1440 | > th | dose dependent | no | NA | NA |
| 458 | 66.89 | humidity | 50 | 1440 | > th | dose dependent | rect. | 7 | 23 |
| 461 | 66.90 | humidity | 90 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 475 | 66.95 | humidity | 60 | 1440 | > th | dose dependent | rect. | 9 | 6 |
| 497 | 66.97 | humidity | 90 | 1440 | < th | dose dependent | rect. | 9 | 23 |
| 499 | 66.98 | humidity | 90 | 1440 | < th | dose dependent | no | NA | NA |
| 514 | 67.01 | humidity | 90 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 537 | 67.07 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 543 | 67.09 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 555 | 67.12 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 568 | 67.16 | humidity | 60 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 585 | 67.18 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 764 | 67.60 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 23 |
| 960 | 67.89 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 21 |