Os06g0697600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : AAA ATPase domain containing protein.
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Os06g0697600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : AAA ATPase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 334.64 | 0.859 | 8.63 | 6.35 | 1.16 | 2.94 | 1.75 | -8.57 | 0.6 | 20.7 | 25.02 | 5222 | -- | -- |
| 348.08 | 0.869 | 8.78 | 5.98 | 0.95 | 4.07 | 1.89 | -- | 0.652 | 20.6 | 19.9 | 9194 | -- | -- |
| 344.4 | 0.864 | 8.61 | 6.4 | 1.14 | 2.95 | -- | -8.88 | 0.664 | 20.8 | 24.97 | 5221 | -- | -- |
| 359.76 | 0.883 | 8.82 | 5.67 | 0.978 | 3.94 | -- | -- | 0.54 | 20.4 | 19.8 | 9196 | -- | -- |
| 406.54 | 0.939 | 8.56 | 6.4 | -- | 2.72 | -- | -8.23 | 0.783 | -- | 24.7 | 5837 | -- | -- |
| 563.78 | 1.11 | 9.08 | 2.85 | 0.975 | -- | 2.06 | -- | -0.57 | 20.1 | -- | -- | -- | -- |
| 576.63 | 1.12 | 9.07 | 2.79 | 0.972 | -- | -- | -- | -0.569 | 20.2 | -- | -- | -- | -- |
| 415.48 | 0.949 | 8.79 | 5.7 | -- | 3.89 | -- | -- | 0.569 | -- | 19.63 | 10300 | -- | -- |
| 750.17 | 1.28 | 9.11 | -- | 0.926 | 0.894 | -- | -- | -0.753 | 19.6 | 19.8 | 9196 | -- | -- |
| 628.65 | 1.17 | 9.05 | 2.78 | -- | -- | -- | -- | -0.58 | -- | -- | -- | -- | -- |
| 781.47 | 1.31 | 9.14 | -- | 0.958 | -- | -- | -- | -0.879 | 20.4 | -- | -- | -- | -- |
| 759.28 | 1.28 | 9.02 | -- | -- | 1.27 | -- | -- | -0.451 | -- | 22.8 | 1600 | -- | -- |
| 832.51 | 1.35 | 9.12 | -- | -- | -- | -- | -- | -0.888 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 336.03 | temperature | 15 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 3 | 336.91 | temperature | 30 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 6 | 337.06 | temperature | 15 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 7 | 337.07 | temperature | 30 | 4320 | < th | dose dependent | rect. | 6 | 3 |
| 12 | 337.35 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 10 |
| 17 | 337.47 | temperature | 30 | 14400 | < th | dose dependent | rect. | 21 | 2 |
| 36 | 338.01 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 13 |
| 43 | 338.15 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 10 |
| 51 | 338.42 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 13 |
| 67 | 338.67 | temperature | 10 | 14400 | > th | dose dependent | rect. | 19 | 9 |
| 68 | 338.67 | temperature | 30 | 14400 | < th | dose dependent | rect. | 19 | 9 |
| 130 | 338.99 | temperature | 20 | 14400 | > th | dose dependent | rect. | 15 | 7 |
| 191 | 339.40 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 20 |
| 223 | 339.60 | temperature | 10 | 14400 | > th | dose dependent | sin | 11 | NA |
| 250 | 339.74 | temperature | 25 | 4320 | < th | dose independent | sin | 1 | NA |
| 258 | 339.78 | temperature | 30 | 14400 | < th | dose dependent | sin | 11 | NA |
| 265 | 339.80 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 290 | 339.88 | temperature | 10 | 14400 | > th | dose dependent | rect. | 3 | 2 |
| 310 | 339.93 | temperature | 30 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 355 | 340.07 | temperature | 25 | 4320 | > th | dose independent | sin | 1 | NA |
| 371 | 340.10 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 431 | 340.27 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 452 | 340.34 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 466 | 340.39 | temperature | 15 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 481 | 340.43 | temperature | 20 | 1440 | > th | dose dependent | sin | 3 | NA |
| 540 | 340.60 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 11 |
| 552 | 340.63 | temperature | 20 | 1440 | > th | dose dependent | rect. | 8 | 23 |
| 617 | 340.74 | temperature | 10 | 14400 | > th | dose dependent | rect. | 1 | 9 |
| 635 | 340.78 | temperature | 30 | 14400 | < th | dose dependent | rect. | 1 | 9 |
| 691 | 340.90 | temperature | 15 | 43200 | > th | dose dependent | rect. | 4 | 6 |
| 944 | 341.34 | temperature | 20 | 14400 | > th | dose dependent | sin | 18 | NA |