Os06g0697400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA polymerase Rpb8 family protein.
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Os06g0697400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA polymerase Rpb8 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.04 | 0.27 | 10.6 | -0.169 | 0.924 | 0.253 | -0.511 | -1.74 | -0.277 | 19.8 | 92.31 | 314 | -- | -- |
| 34.96 | 0.275 | 10.6 | -0.172 | 0.9 | 0.478 | -0.0886 | -- | -0.297 | 20.1 | 95.06 | 383 | -- | -- |
| 33.08 | 0.268 | 10.6 | -0.16 | 0.948 | 0.51 | -- | -1.88 | -0.3 | 19.9 | 94.66 | 324 | -- | -- |
| 34.84 | 0.275 | 10.6 | -0.175 | 0.936 | 0.603 | -- | -- | -0.294 | 20 | 94.93 | 375 | -- | -- |
| 54.72 | 0.345 | 10.6 | -0.272 | -- | -0.97 | -- | -0.0697 | -0.286 | -- | 70.06 | 648 | -- | -- |
| 36.78 | 0.284 | 10.6 | -0.195 | 0.887 | -- | -0.0841 | -- | -0.319 | 20 | -- | -- | -- | -- |
| 36.8 | 0.284 | 10.6 | -0.193 | 0.887 | -- | -- | -- | -0.32 | 20 | -- | -- | -- | -- |
| 52.92 | 0.339 | 10.6 | -0.196 | -- | -0.927 | -- | -- | -0.391 | -- | 67 | 644 | -- | -- |
| 35.69 | 0.278 | 10.6 | -- | 0.925 | 0.563 | -- | -- | -0.288 | 20 | 95 | 375 | -- | -- |
| 79.78 | 0.417 | 10.6 | -0.202 | -- | -- | -- | -- | -0.331 | -- | -- | -- | -- | -- |
| 37.78 | 0.288 | 10.6 | -- | 0.889 | -- | -- | -- | -0.298 | 20 | -- | -- | -- | -- |
| 53.96 | 0.342 | 10.6 | -- | -- | -0.931 | -- | -- | -0.375 | -- | 68.02 | 636 | -- | -- |
| 80.86 | 0.42 | 10.6 | -- | -- | -- | -- | -- | -0.309 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.65 | temperature | 25.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 9 | 33.14 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 10 | 33.14 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 11 | 33.17 | temperature | 25.0 | 30 | < th | dose independent | rect. | 1 | 9 |
| 19 | 33.54 | temperature | 25.0 | 10 | > th | dose independent | rect. | 23 | 10 |
| 21 | 33.62 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 1 | 8 |
| 26 | 33.64 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 31 | 33.67 | radiation | 40.0 | 10 | < th | dose independent | rect. | 6 | 18 |
| 36 | 33.71 | humidity | 80.0 | 10 | > th | dose independent | rect. | 6 | 18 |
| 37 | 33.72 | temperature | 25.0 | 10 | > th | dose independent | sin | 5 | NA |
| 39 | 33.72 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 22 | 3 |
| 40 | 33.72 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 6 |
| 41 | 33.72 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 4 | 6 |
| 43 | 33.73 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 3 | 6 |
| 45 | 33.73 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 1 | 9 |
| 50 | 33.74 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 23 | 9 |
| 58 | 33.76 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 1 | 9 |
| 63 | 33.77 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 6 | 3 |
| 76 | 33.79 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 3 | 7 |
| 80 | 33.80 | humidity | 90.0 | 90 | > th | dose dependent | sin | 5 | NA |
| 85 | 33.82 | temperature | 25.0 | 10 | > th | dose independent | rect. | 4 | 12 |
| 89 | 33.83 | humidity | 80.0 | 10 | < th | dose independent | rect. | 9 | 22 |
| 93 | 33.84 | wind | 1.0 | 720 | < th | dose independent | rect. | 23 | 1 |
| 94 | 33.84 | humidity | 90.0 | 30 | < th | dose independent | rect. | 6 | 3 |
| 109 | 33.86 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 7 |
| 126 | 33.88 | wind | 7.0 | 10 | < th | dose dependent | rect. | 6 | 3 |
| 146 | 33.90 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 1 | 19 |
| 151 | 33.91 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 13 | 19 |
| 163 | 33.93 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 16 | 16 |
| 166 | 33.94 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 1 |
| 177 | 33.96 | atmosphere | 1005.0 | 270 | < th | dose dependent | rect. | 1 | 7 |
| 179 | 33.97 | wind | 5.0 | 10 | < th | dose independent | rect. | 6 | 3 |
| 180 | 33.97 | humidity | 90.0 | 90 | > th | dose independent | rect. | 1 | 8 |
| 185 | 33.98 | humidity | 90.0 | 10 | < th | dose independent | rect. | 4 | 5 |
| 196 | 33.99 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 9 | 21 |
| 198 | 33.99 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 206 | 33.99 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 9 | 21 |
| 209 | 34.00 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 8 |
| 228 | 34.01 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 6 | 18 |
| 232 | 34.02 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 7 | 3 |
| 238 | 34.03 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 24 | 6 |
| 247 | 34.04 | wind | 9.0 | 10 | < th | dose independent | rect. | 9 | 21 |
| 265 | 34.06 | temperature | 15.0 | 30 | > th | dose independent | rect. | 9 | 21 |
| 269 | 34.06 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 1 | 16 |
| 294 | 34.08 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 3 | 17 |
| 306 | 34.09 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 4 | 3 |
| 313 | 34.10 | temperature | 10.0 | 30 | > th | dose independent | rect. | 6 | 3 |
| 318 | 34.10 | temperature | 30.0 | 30 | < th | dose independent | rect. | 6 | 3 |
| 319 | 34.10 | humidity | 50.0 | 30 | > th | dose independent | rect. | 6 | 3 |
| 321 | 34.10 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 6 | 3 |
| 322 | 34.10 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 7 | 3 |
| 323 | 34.10 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 6 | 3 |
| 324 | 34.10 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 7 | 3 |
| 325 | 34.10 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 6 | 3 |
| 326 | 34.10 | wind | 1.0 | 43200 | > th | dose independent | rect. | 23 | 12 |
| 330 | 34.10 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 21 |
| 334 | 34.10 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 6 | 3 |
| 351 | 34.11 | radiation | 40.0 | 30 | < th | dose independent | rect. | 6 | 3 |
| 376 | 34.13 | temperature | 25.0 | 30 | < th | dose independent | sin | 6 | NA |
| 406 | 34.15 | radiation | 40.0 | 270 | < th | dose independent | rect. | 12 | 11 |
| 427 | 34.17 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 6 | 3 |
| 428 | 34.17 | temperature | 25.0 | 30 | < th | dose independent | rect. | 1 | 5 |
| 431 | 34.17 | atmosphere | 1005.0 | 270 | < th | dose dependent | rect. | 5 | 1 |
| 432 | 34.17 | atmosphere | 1000.0 | 30 | > th | dose dependent | rect. | 6 | 3 |
| 433 | 34.17 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 440 | 34.18 | humidity | 80.0 | 720 | < th | dose independent | rect. | 9 | 1 |
| 441 | 34.18 | humidity | 90.0 | 90 | > th | dose independent | rect. | 3 | 6 |
| 453 | 34.19 | wind | 1.0 | 43200 | > th | dose independent | sin | 7 | NA |
| 458 | 34.19 | radiation | 40.0 | 10 | < th | dose independent | rect. | 6 | 10 |
| 472 | 34.20 | temperature | 20.0 | 720 | > th | dose independent | rect. | 12 | 11 |
| 476 | 34.20 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 6 | 3 |
| 480 | 34.20 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 6 | 18 |
| 492 | 34.21 | wind | 7.0 | 10 | < th | dose independent | rect. | 16 | 14 |
| 510 | 34.22 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 4 | 5 |
| 521 | 34.23 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 6 | 14 |
| 526 | 34.24 | radiation | 1.0 | 10 | > th | dose independent | rect. | 6 | 3 |
| 537 | 34.24 | temperature | 25.0 | 30 | < th | dose independent | rect. | 1 | 15 |
| 563 | 34.25 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 3 | 5 |
| 579 | 34.26 | temperature | 25.0 | 10 | > th | dose independent | rect. | 23 | 17 |
| 586 | 34.26 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 6 | 3 |
| 592 | 34.26 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 16 | 9 |
| 598 | 34.26 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 3 | 14 |
| 604 | 34.27 | wind | 1.0 | 30 | > th | dose independent | rect. | 6 | 3 |
| 613 | 34.27 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 9 |
| 622 | 34.28 | wind | 1.0 | 43200 | < th | dose independent | rect. | 23 | 13 |
| 637 | 34.29 | radiation | 40.0 | 720 | < th | dose independent | rect. | 12 | 2 |
| 644 | 34.29 | humidity | 80.0 | 30 | > th | dose independent | rect. | 6 | 14 |
| 648 | 34.29 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 2 | 6 |
| 670 | 34.30 | wind | 9.0 | 30 | < th | dose dependent | rect. | 16 | 14 |
| 674 | 34.31 | wind | 1.0 | 43200 | < th | dose independent | sin | 6 | NA |
| 681 | 34.31 | humidity | 90.0 | 720 | > th | dose dependent | sin | 15 | NA |
| 682 | 34.31 | humidity | 90.0 | 270 | > th | dose dependent | no | NA | NA |
| 699 | 34.31 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 700 | 34.32 | humidity | 90.0 | 90 | > th | dose independent | rect. | 5 | 4 |
| 707 | 34.32 | wind | 1.0 | 43200 | > th | dose independent | rect. | 16 | 18 |
| 720 | 34.32 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 6 | 10 |
| 779 | 34.34 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 782 | 34.35 | temperature | 20.0 | 720 | > th | dose independent | rect. | 19 | 5 |
| 803 | 34.36 | humidity | 80.0 | 10 | < th | dose independent | rect. | 20 | 23 |
| 820 | 34.37 | radiation | 10.0 | 90 | < th | dose independent | rect. | 6 | 18 |
| 821 | 34.37 | wind | 1.0 | 43200 | < th | dose independent | rect. | 16 | 19 |
| 823 | 34.37 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 9 | 21 |
| 834 | 34.37 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 16 | 7 |
| 846 | 34.38 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 1 | 9 |
| 857 | 34.38 | humidity | 80.0 | 30 | > th | dose independent | rect. | 21 | 23 |
| 869 | 34.39 | wind | 1.0 | 43200 | > th | dose independent | rect. | 18 | 17 |
| 889 | 34.40 | humidity | 80.0 | 10 | < th | dose independent | rect. | 16 | 23 |
| 895 | 34.40 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 5 | 5 |
| 927 | 34.41 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 21 | 12 |
| 953 | 34.42 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 954 | 34.43 | temperature | 20.0 | 270 | > th | dose independent | rect. | 5 | 2 |