Os06g0695400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Haem peroxidase family protein.
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Os06g0695400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Haem peroxidase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66.8 | 0.384 | 2.97 | -0.203 | 0.104 | -0.535 | -0.458 | 2.35 | 0.0122 | 2.81 | 1.1 | 42 | -- | -- |
| 69.62 | 0.389 | 2.95 | -0.113 | 0.121 | -0.29 | -0.68 | -- | 0.0182 | 2.74 | 1.1 | 31 | -- | -- |
| 67.48 | 0.383 | 2.98 | -0.202 | 0.102 | -0.56 | -- | 2.71 | 0.0118 | 2.41 | 1.019 | 46 | -- | -- |
| 71.15 | 0.393 | 2.95 | -0.0935 | 0.134 | -0.255 | -- | -- | 0.0193 | 3.25 | 1.058 | 31 | -- | -- |
| 67.99 | 0.384 | 2.98 | -0.211 | -- | -0.649 | -- | 2.86 | 0.0182 | -- | 1.06 | 48 | -- | -- |
| 70.98 | 0.395 | 2.96 | -0.0753 | 0.197 | -- | -0.639 | -- | 0.00734 | 3.34 | -- | -- | -- | -- |
| 72.27 | 0.398 | 2.95 | -0.0632 | 0.196 | -- | -- | -- | 0.011 | 3.62 | -- | -- | -- | -- |
| 72.04 | 0.395 | 2.96 | -0.121 | -- | -0.324 | -- | -- | 0.0107 | -- | 1.097 | 31 | -- | -- |
| 71.38 | 0.393 | 2.95 | -- | 0.136 | -0.238 | -- | -- | 0.029 | 3.29 | 1.056 | 31 | -- | -- |
| 74.41 | 0.403 | 2.95 | -0.055 | -- | -- | -- | -- | 0.0162 | -- | -- | -- | -- | -- |
| 72.37 | 0.398 | 2.95 | -- | 0.195 | -- | -- | -- | 0.018 | 3.62 | -- | -- | -- | -- |
| 72.27 | 0.396 | 2.95 | -- | -- | -0.312 | -- | -- | 0.0333 | -- | 1 | 31 | -- | -- |
| 74.49 | 0.403 | 2.95 | -- | -- | -- | -- | -- | 0.0223 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.83 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 5 | 3 |
| 7 | 59.92 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 5 | 3 |
| 17 | 60.07 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 18 | 60.07 | atmosphere | 1000.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 27 | 61.54 | wind | 1.0 | 10 | < th | dose dependent | rect. | 1 | 3 |
| 48 | 62.42 | wind | 1.0 | 10 | < th | dose dependent | rect. | 7 | 21 |
| 55 | 62.88 | wind | 1.0 | 270 | < th | dose dependent | rect. | 22 | 4 |
| 60 | 63.29 | wind | 7.0 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 62 | 63.32 | wind | 7.0 | 1440 | > th | dose independent | rect. | 1 | 2 |
| 68 | 63.39 | temperature | 20.0 | 10 | > th | dose independent | rect. | 1 | 3 |
| 84 | 63.56 | temperature | 20.0 | 30 | > th | dose independent | rect. | 22 | 6 |
| 92 | 63.64 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 5 | 1 |
| 99 | 63.64 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 133 | 64.02 | wind | 1.0 | 10 | < th | dose independent | rect. | 1 | 3 |
| 164 | 64.18 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 2 | 7 |
| 188 | 64.40 | precipitation | 0.1 | 30 | > th | dose independent | rect. | 3 | 1 |
| 194 | 64.40 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 3 | 1 |
| 221 | 64.47 | wind | 1.0 | 10 | < th | dose independent | rect. | 6 | 22 |
| 224 | 64.49 | wind | 1.0 | 270 | < th | dose independent | rect. | 22 | 4 |
| 242 | 64.57 | wind | 1.0 | 10 | < th | dose dependent | sin | 17 | NA |
| 266 | 64.77 | temperature | 20.0 | 10 | > th | dose independent | rect. | 3 | 1 |
| 280 | 64.84 | wind | 1.0 | 270 | < th | dose independent | rect. | 22 | 2 |
| 329 | 65.10 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 22 | 6 |
| 333 | 65.14 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 1 | 3 |
| 365 | 65.30 | temperature | 20.0 | 270 | > th | dose independent | rect. | 22 | 4 |
| 427 | 65.66 | atmosphere | 1000.0 | 30 | < th | dose independent | rect. | 24 | 9 |
| 430 | 65.67 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 454 | 65.74 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 3 | 1 |
| 457 | 65.76 | precipitation | 0.1 | 30 | > th | dose independent | rect. | 3 | 11 |
| 465 | 65.76 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 3 | 11 |
| 506 | 65.79 | wind | 1.0 | 10 | < th | dose independent | sin | 16 | NA |
| 508 | 65.79 | wind | 1.0 | 10 | < th | dose dependent | rect. | 1 | 11 |
| 538 | 65.87 | wind | 3.0 | 90 | > th | dose independent | rect. | 2 | 1 |
| 568 | 65.94 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 588 | 65.98 | wind | 5.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 591 | 65.99 | wind | 5.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 609 | 66.03 | temperature | 25.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 612 | 66.03 | wind | 1.0 | 30 | > th | dose independent | rect. | 23 | 23 |
| 618 | 66.05 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 621 | 66.05 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 625 | 66.05 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 627 | 66.05 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 632 | 66.05 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 633 | 66.05 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 634 | 66.05 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 635 | 66.05 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 640 | 66.05 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 641 | 66.06 | wind | 1.0 | 30 | > th | dose independent | sin | 15 | NA |
| 658 | 66.09 | wind | 7.0 | 10 | > th | dose independent | rect. | 21 | 8 |
| 669 | 66.09 | wind | 7.0 | 10 | > th | dose dependent | rect. | 21 | 8 |
| 728 | 66.30 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 751 | 66.33 | wind | 3.0 | 10 | > th | dose dependent | rect. | 2 | 2 |
| 757 | 66.36 | wind | 5.0 | 90 | > th | dose independent | rect. | 1 | 3 |
| 763 | 66.38 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 24 | 4 |
| 774 | 66.41 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 785 | 66.43 | wind | 3.0 | 90 | > th | dose dependent | rect. | 1 | 3 |
| 788 | 66.44 | wind | 1.0 | 90 | > th | dose dependent | rect. | 2 | 1 |
| 798 | 66.48 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 4 | 6 |
| 806 | 66.48 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 4 | 21 |
| 810 | 66.49 | wind | 1.0 | 270 | < th | dose dependent | sin | 18 | NA |
| 864 | 66.62 | wind | 1.0 | 270 | > th | dose independent | sin | 17 | NA |
| 865 | 66.63 | wind | 7.0 | 10 | > th | dose independent | rect. | 2 | 3 |
| 891 | 66.63 | wind | 7.0 | 10 | > th | dose dependent | rect. | 2 | 3 |
| 919 | 66.64 | wind | 1.0 | 720 | > th | dose independent | rect. | 17 | 7 |
| 924 | 66.65 | temperature | 20.0 | 30 | > th | dose independent | rect. | 10 | 18 |
| 930 | 66.67 | temperature | 20.0 | 30 | > th | dose independent | rect. | 18 | 10 |