Os06g0695300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Haem peroxidase, plant/fungal/bacterial family protein.
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Os06g0695300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Haem peroxidase, plant/fungal/bacterial family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 365.67 | 0.898 | 3.45 | -1.19 | 0.446 | 37.5 | -2.16 | -132 | -0.297 | 4.46 | 0.09572 | 280 | 2 | 2.02 |
| 471.12 | 1.02 | 3.25 | -0.535 | 0.663 | -0.146 | -3.44 | -- | -0.407 | 4.83 | 0.5389 | 4 | 3.96 | 23.9 |
| 377.68 | 0.905 | 3.44 | -1.17 | 0.413 | 37.2 | -- | -132 | -0.283 | 4.47 | 0.09451 | 280 | 2.03 | 1.94 |
| 501.54 | 1.04 | 3.24 | -0.511 | 0.643 | -0.626 | -- | -- | -0.393 | 4.78 | 0.5199 | 13 | 2.87 | 24 |
| 387.04 | 0.916 | 3.45 | -1.17 | -- | 37.1 | -- | -131 | -0.264 | -- | 0.1024 | 282 | 2.03 | 1.92 |
| 471.14 | 1.02 | 3.25 | -0.536 | 0.661 | -- | -3.45 | -- | -0.406 | 4.83 | -- | -- | -- | -- |
| 501.96 | 1.05 | 3.24 | -0.523 | 0.639 | -- | -- | -- | -0.389 | 4.83 | -- | -- | -- | -- |
| 523.23 | 1.07 | 3.25 | -0.486 | -- | -0.484 | -- | -- | -0.371 | -- | 0.5009 | 28 | 3.77 | 24 |
| 504.97 | 1.05 | 3.24 | -- | 0.65 | -0.636 | -- | -- | -0.367 | 4.75 | 0.5072 | 1233 | 6.65 | 23.3 |
| 523.52 | 1.07 | 3.25 | -0.499 | -- | -- | -- | -- | -0.373 | -- | -- | -- | -- | -- |
| 509.17 | 1.06 | 3.23 | -- | 0.629 | -- | -- | -- | -0.331 | 4.85 | -- | -- | -- | -- |
| 526.06 | 1.07 | 3.24 | -- | -- | -0.804 | -- | -- | -0.339 | -- | 0.578 | 539 | 3.62 | 24 |
| 530.1 | 1.07 | 3.24 | -- | -- | -- | -- | -- | -0.317 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 367.75 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 2 | 367.77 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 7 | 384.99 | temperature | 20.0 | 90 | > th | dose independent | rect. | 1 | 5 |
| 12 | 388.73 | temperature | 20.0 | 270 | > th | dose independent | rect. | 23 | 7 |
| 13 | 388.82 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 5 |
| 15 | 388.87 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 5 |
| 17 | 388.98 | wind | 5.0 | 4320 | < th | dose independent | rect. | 24 | 1 |
| 21 | 389.80 | temperature | 20.0 | 10 | > th | dose independent | rect. | 1 | 5 |
| 28 | 390.78 | wind | 5.0 | 4320 | > th | dose independent | rect. | 24 | 1 |
| 29 | 390.92 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 31 | 393.02 | wind | 3.0 | 270 | > th | dose dependent | rect. | 24 | 6 |
| 50 | 394.21 | temperature | 20.0 | 10 | > th | dose independent | rect. | 3 | 1 |
| 52 | 394.39 | wind | 5.0 | 270 | > th | dose independent | rect. | 24 | 7 |
| 80 | 397.52 | temperature | 20.0 | 10 | > th | dose independent | rect. | 3 | 3 |
| 134 | 400.03 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 17 | 4 |
| 149 | 400.92 | wind | 9.0 | 720 | > th | dose dependent | rect. | 19 | 4 |
| 153 | 401.03 | wind | 7.0 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 154 | 401.03 | wind | 9.0 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 155 | 401.03 | wind | 9.0 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 160 | 401.06 | wind | 9.0 | 720 | > th | dose independent | rect. | 19 | 3 |
| 168 | 401.23 | wind | 9.0 | 720 | > th | dose independent | rect. | 20 | 1 |
| 194 | 401.63 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 195 | 401.65 | wind | 7.0 | 4320 | > th | dose independent | rect. | 15 | 14 |
| 212 | 401.81 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 15 | 13 |
| 221 | 401.94 | wind | 9.0 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 223 | 402.01 | wind | 9.0 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 251 | 402.07 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 15 | 7 |
| 291 | 402.13 | wind | 7.0 | 4320 | < th | dose independent | rect. | 15 | 13 |
| 310 | 402.26 | wind | 7.0 | 4320 | < th | dose independent | rect. | 15 | 15 |
| 347 | 403.01 | wind | 7.0 | 4320 | > th | dose independent | rect. | 15 | 8 |
| 356 | 403.22 | wind | 9.0 | 4320 | > th | dose independent | rect. | 17 | 9 |
| 391 | 403.64 | wind | 7.0 | 4320 | < th | dose independent | rect. | 15 | 8 |
| 431 | 404.13 | wind | 9.0 | 4320 | < th | dose independent | rect. | 17 | 9 |
| 437 | 404.20 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 445 | 404.34 | wind | 5.0 | 90 | > th | dose dependent | rect. | 3 | 5 |
| 448 | 404.36 | wind | 5.0 | 270 | > th | dose dependent | rect. | 3 | 1 |
| 474 | 404.78 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 484 | 404.86 | wind | 5.0 | 270 | > th | dose independent | rect. | 3 | 1 |
| 491 | 405.01 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 514 | 405.40 | temperature | 20.0 | 270 | > th | dose independent | rect. | 1 | 1 |
| 523 | 405.52 | wind | 9.0 | 43200 | > th | dose independent | rect. | 15 | 2 |
| 547 | 405.76 | wind | 9.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 549 | 405.78 | temperature | 20.0 | 90 | > th | dose independent | rect. | 12 | 18 |
| 589 | 406.38 | wind | 7.0 | 4320 | > th | dose independent | sin | 13 | NA |
| 619 | 406.79 | wind | 7.0 | 4320 | < th | dose independent | sin | 13 | NA |
| 624 | 406.84 | wind | 5.0 | 10 | > th | dose independent | rect. | 2 | 6 |
| 664 | 407.16 | wind | 9.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 667 | 407.20 | wind | 7.0 | 4320 | > th | dose dependent | sin | 13 | NA |
| 693 | 407.45 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 3 | 1 |
| 701 | 407.57 | wind | 5.0 | 720 | > th | dose independent | rect. | 21 | 6 |
| 716 | 407.66 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 22 | 7 |
| 717 | 407.68 | wind | 5.0 | 720 | > th | dose dependent | sin | 10 | NA |
| 746 | 408.17 | wind | 5.0 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 765 | 408.57 | wind | 5.0 | 720 | > th | dose dependent | rect. | 17 | 13 |
| 807 | 409.22 | wind | 5.0 | 720 | > th | dose independent | rect. | 17 | 13 |
| 811 | 409.27 | wind | 7.0 | 720 | > th | dose independent | sin | 10 | NA |
| 813 | 409.27 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 833 | 409.38 | wind | 5.0 | 720 | < th | dose independent | rect. | 20 | 7 |
| 837 | 409.45 | wind | 5.0 | 1440 | > th | dose independent | rect. | 24 | 14 |
| 853 | 409.60 | wind | 5.0 | 1440 | < th | dose independent | rect. | 24 | 14 |
| 854 | 409.61 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 14 | 4 |
| 859 | 409.67 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 24 | 13 |
| 868 | 409.84 | wind | 5.0 | 720 | > th | dose dependent | rect. | 19 | 9 |
| 926 | 410.40 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 938 | 410.52 | wind | 9.0 | 43200 | < th | dose independent | rect. | 15 | 2 |