Os06g0695200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Peroxidase precursor (EC 1.11.1.7).
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Os06g0695200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Peroxidase precursor (EC 1.11.1.7).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 223.14 | 0.702 | 7.91 | 1.27 | 0.438 | 1.75 | 0.769 | -2.34 | -0.108 | 7.26 | 24.6 | 1607 | -- | -- |
| 223.03 | 0.696 | 7.96 | 0.607 | 0.67 | 1.64 | 0.53 | -- | -0.273 | 6.61 | 22.4 | 1925 | -- | -- |
| 224.45 | 0.698 | 7.91 | 1.29 | 0.458 | 1.75 | -- | -2.34 | -0.11 | 6.68 | 24.5 | 1596 | -- | -- |
| 219.67 | 0.69 | 7.99 | 0.7 | 0.486 | 1.72 | -- | -- | -0.316 | 6.58 | 22 | 1815 | -- | -- |
| 233.79 | 0.712 | 7.92 | 1.31 | -- | 1.78 | -- | -2.36 | -0.1 | -- | 24.5 | 1668 | -- | -- |
| 309.91 | 0.825 | 8.12 | -0.0362 | 0.477 | -- | 0.723 | -- | -0.911 | 7.23 | -- | -- | -- | -- |
| 311.15 | 0.826 | 8.13 | -0.023 | 0.484 | -- | -- | -- | -0.914 | 6.83 | -- | -- | -- | -- |
| 229.41 | 0.705 | 8.01 | 0.659 | -- | 1.64 | -- | -- | -0.362 | -- | 22.02 | 1866 | -- | -- |
| 227.69 | 0.703 | 8.03 | -- | 0.452 | 1.4 | -- | -- | -0.449 | 6.44 | 22.4 | 1876 | -- | -- |
| 323.41 | 0.84 | 8.14 | -0.0124 | -- | -- | -- | -- | -0.905 | -- | -- | -- | -- | -- |
| 311.16 | 0.825 | 8.13 | -- | 0.484 | -- | -- | -- | -0.912 | 6.83 | -- | -- | -- | -- |
| 238.42 | 0.719 | 8.04 | -- | -- | 1.4 | -- | -- | -0.457 | -- | 22.44 | 1925 | -- | -- |
| 323.41 | 0.839 | 8.14 | -- | -- | -- | -- | -- | -0.903 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 222.14 | wind | 9 | 14400 | > th | dose independent | rect. | 5 | 8 |
| 3 | 223.48 | wind | 9 | 14400 | > th | dose independent | rect. | 6 | 6 |
| 9 | 224.31 | wind | 9 | 14400 | < th | dose independent | rect. | 6 | 6 |
| 12 | 224.78 | wind | 9 | 14400 | < th | dose independent | rect. | 5 | 8 |
| 14 | 225.15 | temperature | 25 | 4320 | < th | dose dependent | rect. | 2 | 1 |
| 16 | 225.29 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 23 | 225.71 | temperature | 10 | 4320 | > th | dose dependent | rect. | 2 | 1 |
| 29 | 226.10 | wind | 9 | 14400 | > th | dose independent | rect. | 9 | 4 |
| 33 | 226.17 | wind | 9 | 14400 | < th | dose independent | rect. | 9 | 3 |
| 34 | 226.17 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 41 | 226.23 | radiation | 30 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 56 | 226.52 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 2 |
| 85 | 227.02 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 8 |
| 87 | 227.05 | radiation | 1 | 4320 | < th | dose dependent | rect. | 3 | 2 |
| 96 | 227.19 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 104 | 227.29 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 106 | 227.32 | temperature | 25 | 270 | < th | dose dependent | rect. | 22 | 22 |
| 133 | 227.62 | temperature | 25 | 1440 | < th | dose independent | rect. | 24 | 19 |
| 139 | 227.69 | humidity | 60 | 43200 | < th | dose dependent | rect. | 8 | 6 |
| 140 | 227.70 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 16 |
| 142 | 227.73 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 154 | 227.84 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 2 |
| 162 | 227.88 | humidity | 60 | 43200 | < th | dose dependent | rect. | 20 | 18 |
| 214 | 228.24 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 12 |
| 271 | 228.64 | humidity | 80 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 282 | 228.69 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 312 | 228.82 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 400 | 229.22 | temperature | 25 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 435 | 229.32 | humidity | 60 | 43200 | < th | dose dependent | sin | 6 | NA |
| 498 | 229.54 | wind | 9 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 515 | 229.65 | humidity | 70 | 43200 | > th | dose independent | rect. | 5 | 4 |
| 544 | 229.77 | wind | 7 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 557 | 229.82 | temperature | 25 | 1440 | > th | dose independent | rect. | 24 | 19 |
| 576 | 229.88 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 616 | 230.03 | radiation | 30 | 43200 | < th | dose independent | rect. | 6 | 6 |
| 656 | 230.11 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 661 | 230.13 | radiation | 30 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 791 | 230.53 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 833 | 230.67 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 836 | 230.69 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 840 | 230.70 | temperature | 25 | 1440 | < th | dose independent | no | NA | NA |
| 859 | 230.77 | radiation | 30 | 43200 | < th | dose independent | sin | 6 | NA |
| 879 | 230.81 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 939 | 230.95 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 957 | 230.97 | radiation | 30 | 43200 | > th | dose dependent | rect. | 11 | 1 |