Os06g0694600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os06g0694600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 87.06 | 0.435 | 10.3 | 6.71 | 2.48 | 517 | 0.207 | 1090 | -0.152 | 15.8 | 15 | 90 | -- | -- |
| 89.85 | 0.445 | 7.66 | 1.13 | 2.47 | 1.94 | 0.331 | -- | -0.138 | 15.8 | 15 | 90 | -- | -- |
| 87.18 | 0.435 | 10.3 | 6.72 | 2.49 | 517 | -- | 1090 | -0.15 | 15.8 | 15 | 90 | -- | -- |
| 90.17 | 0.445 | 7.65 | 1.13 | 2.47 | 1.99 | -- | -- | -0.136 | 15.8 | 14.58 | 136 | -- | -- |
| 426.9 | 0.962 | 10.3 | 6.59 | -- | 517 | -- | 1090 | -0.238 | -- | 14.99 | 91 | -- | -- |
| 97.06 | 0.462 | 7.66 | 1.05 | 2.45 | -- | 0.513 | -- | -0.159 | 15.8 | -- | -- | -- | -- |
| 97.83 | 0.463 | 7.66 | 1.06 | 2.45 | -- | -- | -- | -0.156 | 15.8 | -- | -- | -- | -- |
| 423.88 | 0.959 | 7.66 | 1.07 | -- | 1.56 | -- | -- | -0.183 | -- | 14.8 | 1472 | -- | -- |
| 123.32 | 0.52 | 7.68 | -- | 2.45 | 1.41 | -- | -- | -0.265 | 15.8 | 14.58 | 136 | -- | -- |
| 428.9 | 0.968 | 7.65 | 0.955 | -- | -- | -- | -- | -0.221 | -- | -- | -- | -- | -- |
| 127.25 | 0.528 | 7.69 | -- | 2.43 | -- | -- | -- | -0.274 | 15.9 | -- | -- | -- | -- |
| 451.77 | 0.99 | 7.68 | -- | -- | 0.752 | -- | -- | -0.321 | -- | 14.66 | 1229 | -- | -- |
| 452.96 | 0.993 | 7.68 | -- | -- | -- | -- | -- | -0.327 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 78.51 | temperature | 20 | 10 | < th | dose dependent | rect. | 16 | 10 |
| 25 | 78.93 | temperature | 20 | 90 | > th | dose independent | rect. | 17 | 11 |
| 34 | 79.07 | temperature | 15 | 90 | > th | dose dependent | rect. | 17 | 11 |
| 109 | 80.17 | temperature | 25 | 90 | < th | dose dependent | sin | 14 | NA |
| 259 | 81.19 | temperature | 20 | 10 | < th | dose dependent | rect. | 24 | 1 |
| 502 | 82.07 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 4 |
| 514 | 82.13 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 554 | 82.25 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 4 |
| 565 | 82.28 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 2 |
| 604 | 82.38 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 17 | 11 |
| 615 | 82.41 | atmosphere | 1010 | 720 | < th | dose independent | rect. | 15 | 4 |
| 675 | 82.61 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 6 |
| 708 | 82.74 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 2 |
| 721 | 82.80 | temperature | 10 | 90 | > th | dose dependent | rect. | 4 | 13 |
| 744 | 82.89 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 7 |
| 795 | 83.08 | temperature | 20 | 90 | < th | dose independent | rect. | 16 | 9 |
| 867 | 83.32 | temperature | 15 | 90 | > th | dose dependent | rect. | 21 | 7 |
| 914 | 83.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 4 |