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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0693900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.04 (0.0377) R2 : 0.275
β1 : 1.74 (0.163) R2dD : 0.314 R2D : -0.0373
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.52 (0.14) R2dE : 0.355 R2E : -0.0607
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.427 (0.0931) R2dN8 : 0.0691 R2N8 : -0.101
σ : 0.668
deviance : 205.44
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 2.106
memory length : 30179
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
212.38 0.685 3.25 0.0874 0.114 2.43 -0.374 6.34 -0.0503 17.4 0.5512 4322 -- --
230.17 0.707 3.05 1.02 0.063 1.34 0.336 -- 0.222 17.3 3.122 11554 -- --
210.42 0.676 3.25 0.247 0.124 2.51 -- 6.21 -0.059 17.4 0.17 4325 -- --
211.93 0.678 3.02 1.22 0.23 1.35 -- -- 0.256 17.4 2.855 29057 -- --
210.49 0.676 3.28 0.175 -- 2.7 -- 6.88 -0.0936 -- 0.17 4334 -- --
263.8 0.761 3.15 0.761 0.159 -- -0.227 -- -0.112 17.1 -- -- -- --
263.93 0.761 3.15 0.761 0.157 -- -- -- -0.113 17.1 -- -- -- --
205.44 0.668 3.04 1.74 -- 1.52 -- -- 0.427 -- 2.106 30179 -- --
257.41 0.747 3.1 -- 0.294 1.01 -- -- 0.126 18.1 5.627 29561 -- --
265.22 0.761 3.15 0.756 -- -- -- -- -0.117 -- -- -- -- --
279.2 0.782 3.17 -- 0.144 -- -- -- -0.198 17.3 -- -- -- --
258.08 0.748 3.09 -- -- 0.86 -- -- 0.133 -- 5.567 28737 -- --
280.28 0.781 3.17 -- -- -- -- -- -0.201 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 197.32 radiation 1 43200 > th dose dependent rect. 17 1
14 197.64 radiation 20 43200 < th dose dependent rect. 17 13
17 197.70 wind 1 43200 > th dose independent rect. 21 2
21 197.75 radiation 30 43200 > th dose independent rect. 16 16
26 198.15 radiation 30 43200 > th dose independent rect. 7 1
41 198.22 radiation 30 43200 < th dose independent rect. 15 16
43 198.30 radiation 30 43200 < th dose independent rect. 15 8
44 198.30 radiation 30 43200 < th dose independent rect. 15 12
45 198.31 radiation 30 43200 < th dose independent rect. 15 2
57 198.33 radiation 40 43200 < th dose dependent rect. 18 9
60 198.38 wind 1 43200 < th dose independent rect. 21 3
92 198.63 radiation 40 43200 < th dose dependent rect. 18 5
102 198.70 radiation 10 43200 < th dose dependent rect. 18 3
123 198.89 humidity 60 43200 < th dose independent rect. 8 1
124 198.94 wind 1 43200 < th dose independent rect. 23 1
128 199.06 humidity 50 43200 > th dose independent sin 7 NA
130 199.10 humidity 60 43200 > th dose independent rect. 8 1
132 199.10 humidity 50 43200 > th dose independent rect. 19 18
136 199.14 humidity 50 43200 < th dose independent rect. 7 7
140 199.16 humidity 50 43200 < th dose independent rect. 20 18
142 199.19 humidity 50 43200 < th dose independent sin 6 NA
146 199.21 humidity 50 43200 > th dose independent rect. 7 7
149 199.23 radiation 10 43200 < th dose independent rect. 15 2
163 199.33 humidity 50 43200 < th dose independent rect. 17 21
176 199.35 wind 1 43200 < th dose dependent rect. 20 3
198 199.43 radiation 20 43200 < th dose dependent rect. 16 6
232 199.53 radiation 10 43200 < th dose independent rect. 15 4
244 199.53 radiation 10 43200 < th dose dependent rect. 13 17
396 199.95 radiation 10 43200 < th dose dependent sin 14 NA
414 200.07 radiation 1 43200 < th dose independent rect. 18 12
421 200.13 radiation 1 43200 < th dose independent rect. 17 10
425 200.14 radiation 1 43200 < th dose independent rect. 17 4
426 200.14 radiation 1 43200 < th dose independent rect. 17 6
436 200.14 radiation 30 43200 > th dose dependent rect. 15 17
454 200.25 humidity 50 43200 < th dose independent rect. 13 1
462 200.31 humidity 60 43200 > th dose dependent rect. 18 1
464 200.33 humidity 50 43200 < th dose dependent rect. 13 2
484 200.54 humidity 90 43200 > th dose dependent rect. 5 2
507 200.64 wind 1 14400 < th dose dependent rect. 20 7
509 200.67 atmosphere 1010 43200 > th dose independent rect. 15 1
518 200.70 humidity 50 43200 > th dose independent rect. 13 1
525 200.74 radiation 1 43200 < th dose dependent rect. 23 7
535 200.77 radiation 10 43200 < th dose dependent rect. 5 1
537 200.77 radiation 10 43200 < th dose dependent rect. 2 4
557 200.86 radiation 1 43200 > th dose independent rect. 17 2
589 200.87 radiation 40 43200 < th dose dependent rect. 20 10
594 200.88 wind 3 43200 < th dose dependent rect. 22 1
598 200.89 radiation 40 43200 < th dose dependent rect. 22 8
599 200.89 humidity 50 43200 < th dose dependent rect. 6 9
604 200.89 humidity 50 43200 < th dose dependent rect. 20 19
625 200.92 humidity 50 43200 < th dose dependent rect. 10 5
703 201.01 humidity 70 43200 < th dose independent rect. 16 2
736 201.11 radiation 1 43200 < th dose independent rect. 18 17
738 201.11 radiation 10 43200 < th dose dependent rect. 13 10
740 201.11 radiation 1 43200 < th dose dependent rect. 17 18
743 201.12 radiation 10 43200 < th dose dependent rect. 13 6
756 201.14 humidity 70 43200 > th dose independent rect. 16 2
765 201.16 humidity 50 43200 < th dose independent rect. 10 23
794 201.23 atmosphere 1010 43200 < th dose independent rect. 15 1
796 201.24 radiation 10 43200 < th dose independent sin 15 NA
801 201.26 humidity 50 43200 < th dose independent rect. 6 16
841 201.29 humidity 50 43200 < th dose dependent rect. 13 20
843 201.30 humidity 50 43200 < th dose independent no NA NA
890 201.34 humidity 50 43200 < th dose independent rect. 10 12
903 201.36 humidity 70 43200 < th dose independent rect. 15 4
947 201.39 humidity 50 43200 < th dose dependent rect. 13 9
976 201.42 humidity 70 43200 > th dose independent rect. 15 4