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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0693300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.11 (0.0453) R2 : 0.382
β1 : 1.18 (0.213) R2dD : 0.0996 R2D : -0.199
β2 : 1.14 (0.0999) R2dC : 0.179 R2C : 0.159
β3 : -0.463 (0.129) R2dE : 0.0248 R2E : 0.0231
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 4.77 (0.481) R2dD*E : 0.307 R2D*E : 0.121
γ1 : 0.224 (0.101) R2dN8 : 0.0137 R2N8 : -0.0537
σ : 0.717
deviance : 236.71
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_____
C
peak time of C : 17.1
E
wheather : temperature
threshold : 20.16
memory length : 4680
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 6.01
open length of G : 0.955

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
236.35 0.722 5.11 1.18 1.14 -0.459 -0.381 4.76 0.224 17.2 20.18 4683 6.02 0.957
278.15 0.777 5.27 1.03 1.1 -1.3 -0.269 -- 0.164 17.3 17.5 23086 6.48 1.32
236.71 0.717 5.11 1.18 1.14 -0.463 -- 4.77 0.224 17.1 20.16 4680 6.01 0.955
269.29 0.764 5.27 0.941 1.18 -1.61 -- -- 0.139 17.3 18.4 21741 6.52 1.42
303.97 0.812 5.1 1.1 -- -0.515 -- 4.83 0.208 -- 19.93 4682 5.98 0.8
293.27 0.803 5.37 -0.499 1.19 -- -0.588 -- -0.343 17.3 -- -- -- --
294.09 0.803 5.37 -0.497 1.18 -- -- -- -0.346 17.2 -- -- -- --
333.22 0.854 5.33 -0.543 -- -1.05 -- -- -0.267 -- 18.4 21780 6.52 1.48
273.62 0.77 5.31 -- 1.08 -1.19 -- -- -0.0347 17.2 17.2 21743 6.58 1.4
367.07 0.895 5.35 -0.538 -- -- -- -- -0.375 -- -- -- -- --
300.61 0.811 5.36 -- 1.19 -- -- -- -0.291 17.2 -- -- -- --
341.01 0.863 5.32 -- -- -1.05 -- -- -0.207 -- 18.4 21780 6.52 1.48
374.72 0.904 5.34 -- -- -- -- -- -0.316 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 240.09 temperature 20 4320 > th dose independent rect. 6 1
2 240.45 temperature 20 4320 < th dose independent rect. 5 2
5 241.69 temperature 20 1440 > th dose independent rect. 3 3
6 242.11 temperature 20 1440 < th dose independent rect. 3 3
7 242.15 temperature 20 4320 < th dose independent rect. 2 5
11 242.66 temperature 20 4320 > th dose independent rect. 3 1
17 243.10 temperature 20 4320 < th dose independent rect. 3 1
26 243.46 temperature 20 4320 < th dose independent rect. 22 9
32 243.64 temperature 20 4320 > th dose independent rect. 22 9
127 246.48 temperature 20 4320 < th dose independent rect. 23 1
153 247.44 temperature 20 4320 > th dose independent rect. 23 1
172 247.93 temperature 20 4320 > th dose independent sin 9 NA
195 248.38 temperature 20 4320 < th dose independent sin 9 NA
271 250.30 temperature 20 1440 > th dose dependent rect. 5 2
405 252.87 temperature 20 4320 > th dose dependent rect. 22 2
424 253.16 temperature 20 1440 > th dose dependent rect. 24 8
471 253.73 temperature 20 4320 > th dose dependent rect. 20 12
543 254.47 temperature 20 4320 > th dose dependent sin 11 NA
723 255.52 temperature 30 1440 < th dose dependent rect. 2 1
860 256.21 temperature 25 4320 > th dose dependent rect. 16 1
923 256.52 temperature 30 4320 < th dose dependent rect. 6 1
970 256.72 temperature 30 1440 < th dose dependent rect. 24 4