Os06g0693200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os06g0693200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 241.09 | 0.73 | 6.53 | -2.15 | 1.42 | 2.98 | 0.745 | -2.2 | -0.178 | 7.22 | 20.37 | 1314 | -- | -- |
| 245.59 | 0.73 | 6.49 | -1.64 | 1.4 | 3.05 | 0.767 | -- | -0.0622 | 7.34 | 19.3 | 1300 | -- | -- |
| 242.28 | 0.725 | 6.54 | -2.19 | 1.43 | 2.98 | -- | -2.44 | -0.19 | 7.25 | 20.74 | 1296 | -- | -- |
| 246.59 | 0.731 | 6.46 | -1.57 | 1.41 | 2.93 | -- | -- | -0.0222 | 7.01 | 19.26 | 1362 | -- | -- |
| 347.62 | 0.868 | 6.57 | -2.1 | -- | 2.96 | -- | -2.08 | -0.157 | -- | 20.67 | 1358 | -- | -- |
| 492.11 | 1.04 | 6.31 | -0.49 | 1.53 | -- | 0.698 | -- | 0.656 | 6.36 | -- | -- | -- | -- |
| 493.31 | 1.04 | 6.31 | -0.482 | 1.53 | -- | -- | -- | 0.654 | 6.33 | -- | -- | -- | -- |
| 350.99 | 0.873 | 6.5 | -1.57 | -- | 3.03 | -- | -- | -0.0134 | -- | 19.15 | 1370 | -- | -- |
| 298.6 | 0.805 | 6.39 | -- | 1.46 | 2.33 | -- | -- | 0.297 | 6.94 | 21.31 | 1296 | -- | -- |
| 615 | 1.16 | 6.34 | -0.441 | -- | -- | -- | -- | 0.687 | -- | -- | -- | -- | -- |
| 499.43 | 1.05 | 6.3 | -- | 1.52 | -- | -- | -- | 0.708 | 6.34 | -- | -- | -- | -- |
| 402.14 | 0.934 | 6.43 | -- | -- | 2.38 | -- | -- | 0.277 | -- | 21.53 | 1352 | -- | -- |
| 620.14 | 1.16 | 6.33 | -- | -- | -- | -- | -- | 0.736 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 236.92 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 7 |
| 5 | 237.87 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 20 | 239.68 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 27 | 240.26 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 20 |
| 67 | 241.50 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 20 |
| 138 | 242.98 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 147 | 243.08 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 830 | 252.17 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 864 | 252.86 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 889 | 253.26 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 8 |
| 922 | 254.00 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 999 | 255.35 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 1 |