Os06g0693100 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0693100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	6.49	(0.0319)	R²	:	0.931
β₁	:	-2.4	(0.117)	R²_dD	:	0.0655	R²_D	:	0.0645
β₂	:	5.27	(0.0806)	R²_dC	:	0.726	R²_C	:	0.838
β₃	:	-1.95	(0.138)	R²_dE	:	0.0333	R²_E	:	0.13
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-0.317	(0.0681)	R²_dN8	:	0.00466	R²_N8	:	-0.00123
σ	:	0.596
deviance	:	163.86
__

_____

C
peak time of C	:	13.2
E
wheather	:	radiation
threshold	:	2.704
memory length	:	158
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	sin
peak or start time of G	:	18.7
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
161.9	0.598	6.5	-2.35	5.33	-2.03	0.411	-1.67	-0.354	13.4	2.688	106	18.1	--
164.99	0.598	6.51	-2.37	5.34	-1.94	0.472	--	-0.358	13.4	2.936	113	18.3	--
162.51	0.594	6.5	-2.34	5.31	-2.08	--	-1.79	-0.349	13.4	2.601	112	18.2	--
163.86	0.596	6.49	-2.4	5.27	-1.95	--	--	-0.317	13.2	2.704	158	18.7	--
226.02	0.7	6.59	-2.18	--	-5.5	--	-0.789	-0.372	--	85.02	51	4.93	--
228.94	0.709	6.49	-2.3	5.64	--	0.82	--	-0.293	13.4	--	--	--	--
231.68	0.713	6.48	-2.27	5.64	--	--	--	-0.288	13.4	--	--	--	--
226.93	0.702	6.54	-2.28	--	-5.5	--	--	-0.317	--	89.22	69	5.11	--
308.92	0.819	6.43	--	5.41	-1.66	--	--	-0.0865	13.2	5.22	132	18.7	--
2192.8	2.19	6.56	-2.49	--	--	--	--	-0.407	--	--	--	--	--
367.36	0.897	6.43	--	5.68	--	--	--	-0.0353	13.4	--	--	--	--
362.84	0.887	6.49	--	--	-5.54	--	--	-0.0669	--	90.23	71	5.11	--
2356.49	2.27	6.5	--	--	--	--	--	-0.13	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	149.39	radiation	1.0	270	> th	dose independent	rect.	4	12
13	155.38	temperature	10.0	270	> th	dose dependent	rect.	5	10
26	158.80	temperature	30.0	90	< th	dose dependent	rect.	3	18
27	159.40	temperature	30.0	90	< th	dose dependent	rect.	3	10
30	160.04	temperature	30.0	90	< th	dose dependent	rect.	3	12
37	162.42	radiation	10.0	90	< th	dose dependent	rect.	3	19
46	163.12	temperature	30.0	270	< th	dose dependent	rect.	1	9
51	163.62	radiation	1.0	90	> th	dose independent	sin	0	NA
53	163.65	radiation	1.0	90	< th	dose independent	sin	0	NA
55	163.71	temperature	25.0	90	> th	dose independent	rect.	23	17
59	164.15	temperature	30.0	90	< th	dose dependent	rect.	3	14
60	164.31	radiation	1.0	270	< th	dose independent	rect.	1	19
65	164.69	temperature	15.0	270	> th	dose independent	rect.	16	14
68	164.95	radiation	1.0	270	> th	dose independent	sin	2	NA
69	165.16	atmosphere	1010.0	270	< th	dose independent	rect.	16	14
70	165.16	radiation	10.0	270	< th	dose dependent	rect.	1	19
73	165.25	atmosphere	995.0	10	> th	dose dependent	rect.	3	20
84	165.98	radiation	1.0	90	< th	dose independent	rect.	3	18
85	165.99	radiation	10.0	90	< th	dose dependent	rect.	1	22
97	167.07	radiation	1.0	270	< th	dose independent	sin	2	NA
102	167.20	radiation	1.0	270	< th	dose independent	rect.	24	21
105	167.31	atmosphere	1000.0	30	> th	dose independent	rect.	3	20
106	167.43	atmosphere	995.0	90	> th	dose dependent	rect.	3	18
116	167.87	radiation	1.0	90	< th	dose dependent	sin	0	NA
123	168.01	temperature	25.0	270	< th	dose independent	rect.	24	19
130	168.24	humidity	90.0	90	< th	dose independent	rect.	6	11
147	169.13	temperature	20.0	270	> th	dose independent	rect.	5	10
159	169.35	temperature	25.0	90	< th	dose independent	rect.	3	18
170	169.71	temperature	25.0	270	< th	dose independent	rect.	24	15
172	169.77	temperature	25.0	90	< th	dose independent	rect.	3	16
177	169.87	atmosphere	995.0	10	> th	dose dependent	rect.	23	4
178	169.90	temperature	25.0	270	< th	dose independent	rect.	24	11
193	170.28	temperature	10.0	10	> th	dose dependent	rect.	23	17
219	170.77	atmosphere	1000.0	90	> th	dose independent	rect.	3	18
222	170.83	atmosphere	995.0	270	> th	dose dependent	rect.	21	3
226	170.85	temperature	25.0	90	< th	dose independent	rect.	3	12
236	171.06	temperature	25.0	90	< th	dose independent	rect.	3	14
251	171.30	temperature	20.0	10	> th	dose dependent	rect.	6	11
266	171.76	atmosphere	1015.0	270	< th	dose independent	rect.	1	20
270	171.80	radiation	20.0	90	< th	dose dependent	rect.	17	16
274	171.94	temperature	25.0	90	< th	dose independent	rect.	3	10
282	172.02	precipitation	0.1	270	< th	dose independent	rect.	6	10
283	172.02	precipitation	0.1	270	< th	dose dependent	rect.	6	10
340	173.04	radiation	30.0	270	< th	dose independent	rect.	16	14
346	173.17	atmosphere	1015.0	270	< th	dose independent	rect.	6	10
352	173.21	wind	9.0	270	< th	dose independent	rect.	16	14
367	173.47	wind	9.0	270	< th	dose independent	rect.	6	10
373	173.56	wind	7.0	270	< th	dose independent	rect.	20	5
391	173.80	wind	7.0	270	< th	dose independent	rect.	21	3
408	174.05	atmosphere	995.0	270	> th	dose independent	rect.	1	19
410	174.09	precipitation	0.1	270	< th	dose independent	rect.	20	5
411	174.09	precipitation	0.1	270	< th	dose dependent	rect.	20	5
430	174.37	temperature	15.0	270	> th	dose independent	rect.	1	20
432	174.38	temperature	30.0	90	< th	dose dependent	rect.	3	6
445	174.50	temperature	10.0	270	> th	dose independent	rect.	20	5
446	174.50	temperature	30.0	270	< th	dose independent	rect.	20	5
447	174.50	humidity	50.0	270	> th	dose independent	rect.	20	5
450	174.50	atmosphere	995.0	270	> th	dose independent	rect.	20	5
451	174.50	radiation	1.0	270	< th	dose independent	rect.	20	5
458	174.50	radiation	1.0	270	< th	dose dependent	rect.	20	5
465	174.52	wind	9.0	270	< th	dose independent	rect.	1	19
528	174.91	wind	9.0	270	< th	dose independent	rect.	24	21
558	175.21	atmosphere	995.0	270	> th	dose independent	rect.	16	14
571	175.28	temperature	25.0	90	> th	dose independent	sin	3	NA
578	175.37	wind	1.0	270	> th	dose independent	rect.	1	19
599	175.60	atmosphere	995.0	270	> th	dose independent	rect.	24	21
602	175.62	temperature	10.0	270	> th	dose dependent	rect.	20	19
638	176.03	temperature	30.0	30	< th	dose dependent	sin	2	NA
640	176.09	temperature	20.0	10	> th	dose dependent	sin	2	NA
648	176.14	temperature	30.0	90	< th	dose dependent	rect.	21	6
654	176.26	radiation	20.0	43200	< th	dose dependent	rect.	24	4
665	176.35	temperature	15.0	270	> th	dose independent	rect.	24	23
666	176.39	temperature	25.0	90	< th	dose independent	sin	3	NA
723	176.96	temperature	10.0	90	> th	dose independent	rect.	3	18
724	176.96	atmosphere	1015.0	90	< th	dose independent	rect.	3	18
732	176.98	wind	1.0	270	> th	dose independent	rect.	21	3
746	177.11	wind	5.0	30	< th	dose independent	rect.	23	4
766	177.31	temperature	30.0	270	< th	dose dependent	rect.	21	3
776	177.36	precipitation	0.1	30	< th	dose independent	rect.	23	4
777	177.36	precipitation	0.1	30	< th	dose dependent	rect.	23	4
782	177.39	temperature	10.0	30	> th	dose independent	rect.	23	4
783	177.39	temperature	30.0	30	< th	dose independent	rect.	23	4
784	177.39	humidity	50.0	30	> th	dose independent	rect.	23	4
787	177.39	atmosphere	995.0	30	> th	dose independent	rect.	23	4
788	177.39	radiation	1.0	30	< th	dose independent	rect.	23	4
793	177.39	temperature	10.0	30	> th	dose independent	rect.	3	20
795	177.39	atmosphere	1015.0	30	< th	dose independent	rect.	3	20
796	177.39	radiation	1.0	30	< th	dose dependent	rect.	23	4
805	177.42	wind	1.0	270	> th	dose independent	rect.	20	5
838	177.48	wind	9.0	90	< th	dose independent	rect.	3	18
862	177.64	temperature	30.0	30	< th	dose dependent	rect.	23	4
882	177.84	wind	9.0	30	< th	dose independent	rect.	3	20
928	178.20	wind	9.0	270	< th	dose dependent	rect.	21	3
977	178.37	temperature	10.0	1440	> th	dose independent	rect.	24	4
980	178.37	temperature	30.0	1440	< th	dose independent	rect.	24	4
984	178.37	humidity	50.0	1440	> th	dose independent	rect.	24	4
993	178.37	atmosphere	995.0	1440	> th	dose independent	rect.	24	4
994	178.37	radiation	1.0	1440	< th	dose independent	rect.	24	4