Os06g0693000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os06g0693000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 130.01 | 0.536 | 8.3 | -0.3 | 0.362 | 1.17 | -2.41 | -1.41 | 0.501 | 16.2 | 8.48 | 256 | -- | -- |
| 132.89 | 0.537 | 8.31 | -0.323 | 0.329 | 1.13 | -1.59 | -- | 0.445 | 17.4 | 8.751 | 256 | -- | -- |
| 137.37 | 0.546 | 8.31 | -0.289 | 0.172 | 1.03 | -- | -0.206 | 0.483 | 16.2 | 8.77 | 201 | -- | -- |
| 137.58 | 0.546 | 8.3 | -0.283 | 0.189 | 1.04 | -- | -- | 0.49 | 16 | 8.75 | 200 | -- | -- |
| 138.28 | 0.548 | 8.31 | -0.29 | -- | 0.929 | -- | -0.145 | 0.494 | -- | 8.77 | 192 | -- | -- |
| 156.41 | 0.586 | 8.31 | -0.249 | 0.942 | -- | 0.0674 | -- | 0.471 | 1.18 | -- | -- | -- | -- |
| 156.42 | 0.586 | 8.32 | -0.251 | 0.942 | -- | -- | -- | 0.471 | 1.16 | -- | -- | -- | -- |
| 138.49 | 0.548 | 8.3 | -0.284 | -- | 0.934 | -- | -- | 0.498 | -- | 8.77 | 192 | -- | -- |
| 139.81 | 0.551 | 8.3 | -- | 0.17 | 1.03 | -- | -- | 0.517 | 15.8 | 8.752 | 198 | -- | -- |
| 211.4 | 0.679 | 8.3 | -0.215 | -- | -- | -- | -- | 0.49 | -- | -- | -- | -- | -- |
| 158.08 | 0.588 | 8.31 | -- | 0.938 | -- | -- | -- | 0.499 | 1.15 | -- | -- | -- | -- |
| 140.66 | 0.552 | 8.29 | -- | -- | 0.923 | -- | -- | 0.518 | -- | 8.764 | 192 | -- | -- |
| 212.62 | 0.681 | 8.3 | -- | -- | -- | -- | -- | 0.514 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 125.84 | radiation | 1e+01 | 270 | < th | dose independent | rect. | 9 | 22 |
| 2 | 126.31 | radiation | 2e+01 | 270 | < th | dose dependent | rect. | 10 | 21 |
| 25 | 128.56 | wind | 9e+00 | 14400 | < th | dose independent | rect. | 20 | 4 |
| 32 | 128.82 | wind | 9e+00 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 39 | 129.15 | wind | 9e+00 | 14400 | > th | dose independent | rect. | 20 | 4 |
| 45 | 129.30 | humidity | 7e+01 | 270 | > th | dose independent | rect. | 11 | 20 |
| 49 | 129.44 | precipitation | 1e-01 | 43200 | > th | dose dependent | rect. | 16 | 2 |
| 53 | 129.63 | wind | 9e+00 | 14400 | < th | dose independent | rect. | 20 | 7 |
| 62 | 129.80 | wind | 7e+00 | 14400 | > th | dose dependent | rect. | 20 | 2 |
| 68 | 129.99 | wind | 9e+00 | 14400 | > th | dose independent | rect. | 20 | 6 |
| 75 | 130.09 | radiation | 1e+01 | 90 | < th | dose independent | rect. | 19 | 23 |
| 106 | 130.78 | wind | 9e+00 | 14400 | < th | dose independent | rect. | 17 | 4 |
| 107 | 130.79 | wind | 9e+00 | 14400 | > th | dose dependent | rect. | 20 | 4 |
| 109 | 130.83 | radiation | 1e+01 | 90 | < th | dose independent | rect. | 3 | 23 |
| 113 | 130.88 | wind | 7e+00 | 14400 | > th | dose dependent | rect. | 18 | 3 |
| 115 | 130.92 | radiation | 1e+01 | 270 | < th | dose dependent | no | NA | NA |
| 123 | 130.99 | wind | 9e+00 | 14400 | > th | dose dependent | rect. | 20 | 6 |
| 138 | 131.18 | precipitation | 1e-01 | 4320 | > th | dose dependent | rect. | 14 | 4 |
| 139 | 131.19 | wind | 9e+00 | 14400 | < th | dose independent | rect. | 17 | 11 |
| 152 | 131.28 | radiation | 2e+01 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 155 | 131.30 | wind | 9e+00 | 14400 | < th | dose independent | rect. | 17 | 8 |
| 165 | 131.38 | wind | 9e+00 | 14400 | > th | dose dependent | rect. | 17 | 11 |
| 170 | 131.41 | wind | 9e+00 | 14400 | > th | dose dependent | rect. | 17 | 7 |
| 181 | 131.48 | radiation | 1e+01 | 270 | < th | dose independent | no | NA | NA |
| 184 | 131.49 | wind | 9e+00 | 14400 | > th | dose independent | rect. | 17 | 11 |
| 201 | 131.55 | wind | 9e+00 | 14400 | > th | dose dependent | rect. | 17 | 17 |
| 231 | 131.70 | radiation | 1e+01 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 235 | 131.74 | precipitation | 1e-01 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 254 | 131.89 | radiation | 2e+01 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 266 | 131.96 | atmosphere | 1e+03 | 14400 | < th | dose dependent | rect. | 8 | 5 |
| 269 | 131.98 | wind | 9e+00 | 14400 | > th | dose independent | rect. | 17 | 17 |
| 270 | 131.98 | atmosphere | 1e+03 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 273 | 131.99 | atmosphere | 1e+03 | 14400 | < th | dose dependent | rect. | 7 | 8 |
| 292 | 132.05 | atmosphere | 1e+03 | 14400 | < th | dose independent | rect. | 9 | 3 |
| 298 | 132.06 | atmosphere | 1e+03 | 14400 | > th | dose independent | rect. | 9 | 3 |
| 304 | 132.08 | atmosphere | 1e+03 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 308 | 132.09 | atmosphere | 1e+03 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 312 | 132.09 | radiation | 1e+01 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 347 | 132.19 | atmosphere | 1e+03 | 14400 | < th | dose independent | rect. | 5 | 8 |
| 433 | 132.38 | radiation | 1e+01 | 270 | < th | dose independent | rect. | 15 | 23 |
| 445 | 132.41 | atmosphere | 1e+03 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 448 | 132.42 | atmosphere | 1e+03 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 450 | 132.42 | atmosphere | 1e+03 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 461 | 132.44 | wind | 9e+00 | 14400 | > th | dose dependent | sin | 11 | NA |
| 468 | 132.45 | atmosphere | 1e+03 | 14400 | < th | dose dependent | sin | 2 | NA |
| 479 | 132.47 | precipitation | 1e-01 | 4320 | < th | dose independent | rect. | 14 | 4 |
| 480 | 132.47 | precipitation | 1e-01 | 4320 | < th | dose dependent | rect. | 14 | 4 |
| 581 | 132.72 | wind | 9e+00 | 14400 | > th | dose dependent | rect. | 20 | 14 |
| 629 | 132.84 | precipitation | 1e-01 | 4320 | > th | dose independent | rect. | 14 | 4 |
| 720 | 133.05 | wind | 9e+00 | 14400 | > th | dose independent | rect. | 20 | 14 |
| 775 | 133.19 | radiation | 1e+01 | 270 | < th | dose independent | rect. | 1 | 23 |
| 807 | 133.25 | radiation | 1e+01 | 30 | < th | dose independent | rect. | 5 | 21 |
| 821 | 133.28 | humidity | 7e+01 | 90 | > th | dose independent | rect. | 12 | 11 |
| 881 | 133.40 | radiation | 1e+01 | 90 | < th | dose independent | sin | 22 | NA |
| 908 | 133.45 | atmosphere | 1e+03 | 14400 | < th | dose dependent | no | NA | NA |
| 930 | 133.49 | radiation | 2e+01 | 270 | < th | dose independent | rect. | 11 | 10 |
| 949 | 133.51 | atmosphere | 1e+03 | 14400 | < th | dose dependent | rect. | 9 | 23 |
| 954 | 133.52 | atmosphere | 1e+03 | 14400 | < th | dose dependent | rect. | 14 | 23 |
| 982 | 133.58 | humidity | 7e+01 | 270 | > th | dose independent | rect. | 11 | 9 |