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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0692800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF547 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.11 (0.0221) R2 : 0.00199
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0444 (0.0465) R2dN8 : 0.00257 R2N8 : 0.00199
σ : 0.416
deviance : 79.49
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
72.37 0.4 3.13 -0.0179 0.0606 -0.488 0.0283 1.93 0.0354 9.47 1.002 16 -- --
75.57 0.405 3.11 0.0568 0.0687 -0.357 0.114 -- 0.057 9.75 1.1 16 -- --
72.37 0.396 3.13 -0.0166 0.0611 -0.486 -- 1.93 0.0354 9.24 1.016 16 -- --
75.57 0.405 3.11 0.0626 0.0764 -0.339 -- -- 0.056 8.31 1.1 16 -- --
72.59 0.397 3.13 -0.0188 -- -0.495 -- 1.96 0.0354 -- 1.022 16 -- --
77.94 0.414 3.11 0.103 0.148 -- -0.241 -- 0.0517 5.64 -- -- -- --
78.06 0.414 3.1 0.103 0.148 -- -- -- 0.053 6.1 -- -- -- --
75.89 0.406 3.11 0.0597 -- -0.359 -- -- 0.0575 -- 1.073 16 -- --
75.67 0.405 3.11 -- 0.0765 -0.346 -- -- 0.0499 8.27 1.1 16 -- --
79.19 0.416 3.11 0.107 -- -- -- -- 0.0563 -- -- -- -- --
78.34 0.414 3.11 -- 0.149 -- -- -- 0.0415 6.06 -- -- -- --
75.98 0.406 3.11 -- -- -0.367 -- -- 0.051 -- 1.08 16 -- --
79.49 0.416 3.11 -- -- -- -- -- 0.0444 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 61.77 atmosphere 1015.0 30 < th dose dependent rect. 2 1
3 61.81 wind 3.0 30 < th dose independent rect. 2 1
6 61.82 wind 5.0 30 < th dose dependent rect. 2 1
9 61.82 atmosphere 1005.0 90 > th dose dependent rect. 2 1
14 61.84 temperature 10.0 30 > th dose independent rect. 2 1
16 61.84 temperature 25.0 30 < th dose independent rect. 2 1
18 61.84 humidity 50.0 30 > th dose independent rect. 2 1
21 61.84 atmosphere 995.0 30 > th dose independent rect. 2 1
22 61.84 atmosphere 1010.0 30 < th dose independent rect. 2 1
24 61.84 radiation 1.0 30 < th dose independent rect. 2 1
29 61.84 precipitation 0.1 30 < th dose independent rect. 2 1
30 61.84 temperature 10.0 30 > th dose independent rect. 3 23
31 61.84 temperature 30.0 30 < th dose dependent rect. 2 1
32 61.84 humidity 50.0 30 > th dose dependent rect. 2 1
34 61.84 atmosphere 1005.0 10 > th dose dependent rect. 2 1
35 61.84 radiation 1.0 30 < th dose dependent rect. 2 1
40 61.84 precipitation 0.1 30 < th dose dependent rect. 2 1
44 61.85 temperature 10.0 30 > th dose dependent rect. 2 1
49 61.86 humidity 90.0 30 > th dose independent rect. 2 1
54 61.89 atmosphere 995.0 30 > th dose dependent rect. 2 1
64 61.95 wind 1.0 30 > th dose independent rect. 2 1
84 61.96 atmosphere 995.0 30 > th dose independent rect. 3 23
107 62.36 precipitation 0.1 30 < th dose independent rect. 3 23
108 62.36 precipitation 0.1 30 < th dose dependent rect. 3 23
112 62.57 wind 9.0 30 < th dose independent rect. 3 23
113 62.58 radiation 1.0 43200 < th dose dependent rect. 3 1
137 63.13 wind 9.0 1440 < th dose independent rect. 3 1
138 63.13 temperature 10.0 1440 > th dose independent rect. 3 1
141 63.13 temperature 30.0 1440 < th dose independent rect. 3 1
145 63.13 humidity 50.0 1440 > th dose independent rect. 3 1
154 63.13 atmosphere 995.0 1440 > th dose independent rect. 3 1
155 63.13 radiation 1.0 1440 < th dose independent rect. 3 1
175 63.13 temperature 10.0 1440 > th dose independent rect. 4 23
193 65.12 humidity 50.0 30 > th dose independent rect. 3 23
258 68.15 humidity 90.0 90 < th dose independent rect. 2 1
267 68.59 atmosphere 1015.0 30 < th dose independent rect. 3 23
318 69.91 temperature 30.0 30 < th dose independent rect. 3 23
324 70.07 wind 1.0 10 < th dose independent rect. 14 13
328 70.10 wind 1.0 10 < th dose independent rect. 17 10
331 70.12 wind 1.0 10 < th dose independent rect. 21 6
365 70.80 temperature 25.0 270 > th dose independent rect. 23 4
370 70.87 temperature 10.0 720 > th dose independent rect. 15 8
371 70.87 temperature 10.0 720 > th dose independent rect. 23 16
378 70.97 wind 1.0 10 < th dose independent rect. 6 21
390 71.07 temperature 10.0 720 > th dose independent rect. 3 8
391 71.07 atmosphere 995.0 720 > th dose independent rect. 3 8
392 71.07 temperature 10.0 720 > th dose independent rect. 11 16
399 71.20 wind 1.0 10 < th dose independent rect. 8 19
407 71.26 wind 9.0 720 < th dose independent rect. 3 8
408 71.26 atmosphere 995.0 720 > th dose independent rect. 23 16
412 71.30 precipitation 0.1 720 < th dose independent rect. 15 8
415 71.30 precipitation 0.1 720 < th dose dependent rect. 15 8
416 71.31 wind 1.0 30 > th dose dependent rect. 2 1
426 71.44 humidity 50.0 720 > th dose independent rect. 3 8
464 71.62 wind 9.0 30 < th dose dependent rect. 3 23
481 71.75 radiation 40.0 720 < th dose independent rect. 15 8
494 71.81 wind 1.0 30 > th dose independent rect. 3 23
496 71.83 wind 1.0 10 > th dose independent sin 15 NA
500 71.85 temperature 10.0 30 > th dose dependent rect. 3 23
501 71.86 atmosphere 1015.0 720 < th dose independent rect. 3 8
505 71.87 atmosphere 1015.0 1440 < th dose independent rect. 3 1
518 71.99 precipitation 0.1 720 < th dose independent rect. 11 16
520 71.99 precipitation 0.1 720 < th dose dependent rect. 11 16
577 72.40 radiation 10.0 30 < th dose independent rect. 3 23
584 72.49 atmosphere 995.0 720 > th dose independent rect. 15 8
601 72.60 radiation 10.0 30 < th dose dependent rect. 3 23
606 72.64 atmosphere 995.0 720 > th dose independent rect. 11 16
635 72.73 atmosphere 995.0 30 > th dose dependent rect. 3 23
645 72.79 wind 3.0 30 < th dose dependent rect. 22 5
661 72.89 precipitation 0.1 720 < th dose independent rect. 3 8
665 72.89 precipitation 0.1 720 < th dose dependent rect. 3 8
673 72.98 wind 1.0 10 < th dose independent rect. 2 5
693 73.08 radiation 40.0 30 < th dose dependent rect. 3 23
755 73.14 precipitation 0.1 720 < th dose independent rect. 23 16
759 73.14 precipitation 0.1 720 < th dose dependent rect. 23 16
760 73.15 wind 9.0 720 < th dose independent rect. 15 8
764 73.17 wind 3.0 30 < th dose dependent rect. 20 7
770 73.19 humidity 50.0 30 > th dose dependent rect. 3 23
773 73.20 wind 3.0 30 < th dose dependent rect. 13 14
861 73.31 wind 3.0 30 < th dose dependent rect. 16 11
879 73.37 wind 9.0 720 < th dose independent rect. 23 16
919 73.51 wind 3.0 30 < th dose dependent rect. 2 6
948 73.62 wind 1.0 10 > th dose independent no NA NA
953 73.64 radiation 40.0 30 < th dose independent rect. 3 23
974 73.73 wind 1.0 10 > th dose independent rect. 23 23
979 73.78 wind 1.0 720 > th dose independent rect. 15 8