Os06g0692700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine rich repeat, N-terminal domain containing protein.
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Os06g0692700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine rich repeat, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 143.47 | 0.563 | 7.1 | 2.68 | 1.79 | 0.83 | -0.548 | 0.961 | 0.553 | 20.7 | 21 | 1065 | -- | -- |
| 145.88 | 0.563 | 7.12 | 2.53 | 1.8 | 0.702 | -0.376 | -- | 0.541 | 20.7 | 20.71 | 978 | -- | -- |
| 144.42 | 0.56 | 7.1 | 2.68 | 1.79 | 0.818 | -- | 0.851 | 0.551 | 20.7 | 20.97 | 1070 | -- | -- |
| 145.93 | 0.563 | 7.13 | 2.5 | 1.78 | 0.724 | -- | -- | 0.493 | 20.7 | 21.3 | 1001 | -- | -- |
| 310 | 0.82 | 7.06 | 2.61 | -- | 1.03 | -- | 0.74 | 0.508 | -- | 21.3 | 752 | -- | -- |
| 161.28 | 0.595 | 7.09 | 2.77 | 1.86 | -- | -0.39 | -- | 0.695 | 20.9 | -- | -- | -- | -- |
| 161.79 | 0.596 | 7.09 | 2.78 | 1.86 | -- | -- | -- | 0.695 | 20.9 | -- | -- | -- | -- |
| 276.67 | 0.775 | 7.12 | 2.37 | -- | 1.32 | -- | -- | 0.313 | -- | 25.87 | 617 | -- | -- |
| 162.8 | 0.594 | 7.29 | -- | 1.84 | 2.2 | -- | -- | -0.202 | 20.8 | 19.21 | 47520 | -- | -- |
| 359.57 | 0.886 | 7.04 | 2.78 | -- | -- | -- | -- | 0.682 | -- | -- | -- | -- | -- |
| 366.1 | 0.895 | 7.16 | -- | 1.86 | -- | -- | -- | 0.385 | 21 | -- | -- | -- | -- |
| 355.63 | 0.878 | 7.24 | -- | -- | 2.22 | -- | -- | -0.225 | -- | 19.4 | 47520 | -- | -- |
| 563.95 | 1.11 | 7.11 | -- | -- | -- | -- | -- | 0.373 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 129.22 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 8 |
| 2 | 129.84 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 9 |
| 18 | 132.64 | temperature | 20 | 270 | > th | dose dependent | sin | 4 | NA |
| 31 | 134.41 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 10 |
| 40 | 134.80 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 46 | 134.95 | temperature | 30 | 270 | < th | dose dependent | sin | 4 | NA |
| 102 | 136.38 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 11 |
| 112 | 136.60 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 16 |
| 126 | 136.83 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 2 |
| 148 | 137.19 | temperature | 25 | 270 | > th | dose independent | sin | 2 | NA |
| 150 | 137.24 | temperature | 25 | 270 | < th | dose independent | sin | 3 | NA |
| 153 | 137.27 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 10 |
| 154 | 137.32 | temperature | 20 | 720 | > th | dose independent | rect. | 24 | 5 |
| 168 | 137.51 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 5 |
| 195 | 137.78 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 4 |
| 207 | 137.90 | temperature | 20 | 720 | > th | dose independent | rect. | 24 | 9 |
| 231 | 138.17 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 4 |
| 238 | 138.27 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 17 |
| 253 | 138.44 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 12 |
| 254 | 138.44 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 19 |
| 358 | 139.13 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 12 |
| 444 | 139.69 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 5 |
| 478 | 139.89 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 3 |
| 480 | 139.91 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 1 |
| 524 | 140.13 | wind | 1 | 14400 | < th | dose independent | rect. | 24 | 4 |
| 540 | 140.23 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 17 |
| 663 | 140.80 | temperature | 25 | 10 | < th | dose independent | rect. | 6 | 6 |
| 668 | 140.82 | wind | 1 | 14400 | < th | dose dependent | rect. | 1 | 3 |
| 704 | 140.93 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 1 |
| 750 | 141.17 | wind | 1 | 14400 | < th | dose independent | rect. | 23 | 7 |
| 840 | 141.50 | temperature | 20 | 720 | > th | dose independent | sin | 7 | NA |
| 900 | 141.76 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 5 |
| 928 | 141.87 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 943 | 141.93 | wind | 1 | 14400 | < th | dose dependent | rect. | 1 | 5 |
| 979 | 142.06 | temperature | 20 | 720 | < th | dose independent | sin | 7 | NA |