Os06g0692600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os06g0692600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 91.5 | 0.449 | 3.11 | 0.383 | 0.112 | 4.07 | -0.0962 | 18.7 | 0.0499 | 4.23 | 10.35 | 609 | -- | -- |
| 101.89 | 0.474 | 3.05 | 0.163 | 0.141 | 0.0425 | -0.0662 | -- | 0.0531 | 3.67 | 5.976 | 392 | -- | -- |
| 91.3 | 0.445 | 3.11 | 0.418 | 0.119 | 4.49 | -- | 20.7 | 0.0595 | 4.18 | 10.4 | 606 | -- | -- |
| 101.71 | 0.47 | 3.05 | 0.186 | 0.128 | 0.149 | -- | -- | 0.0628 | 4.25 | 4.255 | 924 | -- | -- |
| 91.96 | 0.447 | 3.11 | 0.416 | -- | 4.52 | -- | 21 | 0.0532 | -- | 10.4 | 605 | -- | -- |
| 101.9 | 0.473 | 3.05 | 0.158 | 0.136 | -- | -0.052 | -- | 0.0516 | 3.65 | -- | -- | -- | -- |
| 101.91 | 0.473 | 3.05 | 0.159 | 0.136 | -- | -- | -- | 0.052 | 3.58 | -- | -- | -- | -- |
| 102.25 | 0.471 | 3.04 | 0.191 | -- | 0.497 | -- | -- | 0.0668 | -- | 10 | 405 | -- | -- |
| 102.53 | 0.474 | 3.05 | -- | 0.126 | -0.0543 | -- | -- | 0.0339 | 3.56 | 4.255 | 924 | -- | -- |
| 102.93 | 0.474 | 3.05 | 0.164 | -- | -- | -- | -- | 0.0556 | -- | -- | -- | -- | -- |
| 102.57 | 0.474 | 3.05 | -- | 0.139 | -- | -- | -- | 0.0343 | 3.57 | -- | -- | -- | -- |
| 103.1 | 0.473 | 3.05 | -- | -- | 0.428 | -- | -- | 0.043 | -- | 10 | 377 | -- | -- |
| 103.65 | 0.475 | 3.05 | -- | -- | -- | -- | -- | 0.0373 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 86.88 | wind | 3.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 2 | 86.88 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 4 | 86.98 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 8 | 87.03 | wind | 3.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 12 | 87.07 | temperature | 25.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 13 | 87.07 | humidity | 80.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 14 | 87.10 | temperature | 20.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 16 | 87.14 | wind | 9.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 17 | 87.14 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 20 | 87.14 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 23 | 87.14 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 24 | 87.14 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 25 | 87.14 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 27 | 87.14 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 32 | 87.14 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 33 | 87.14 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 34 | 87.14 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 39 | 87.14 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 40 | 87.15 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 48 | 87.54 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 49 | 87.84 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 58 | 89.04 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 70 | 89.79 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 101 | 90.48 | wind | 1.0 | 270 | < th | dose independent | rect. | 19 | 1 |
| 103 | 90.48 | wind | 1.0 | 270 | < th | dose dependent | rect. | 19 | 1 |
| 105 | 90.50 | atmosphere | 1000.0 | 270 | < th | dose dependent | rect. | 17 | 5 |
| 106 | 90.51 | atmosphere | 1000.0 | 270 | < th | dose dependent | rect. | 18 | 2 |
| 110 | 90.52 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 19 | 1 |
| 117 | 90.54 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 19 | 6 |
| 120 | 90.55 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 20 | 4 |
| 123 | 90.56 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 17 | 8 |
| 126 | 90.57 | wind | 9.0 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 129 | 90.59 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 22 | 1 |
| 130 | 90.60 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 23 | 1 |
| 137 | 90.61 | atmosphere | 1000.0 | 30 | < th | dose dependent | rect. | 16 | 8 |
| 151 | 90.63 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 22 | 5 |
| 192 | 90.68 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 23 | 5 |
| 207 | 90.70 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 16 | 10 |
| 209 | 90.70 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 16 | 12 |
| 213 | 90.71 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 23 | 3 |
| 225 | 90.73 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 23 | 1 |
| 347 | 90.85 | atmosphere | 1000.0 | 30 | < th | dose independent | sin | 12 | NA |
| 392 | 91.08 | atmosphere | 1000.0 | 30 | > th | dose independent | sin | 12 | NA |
| 466 | 91.38 | wind | 9.0 | 720 | > th | dose independent | rect. | 17 | 1 |
| 588 | 91.68 | wind | 9.0 | 720 | > th | dose dependent | sin | 13 | NA |
| 589 | 91.68 | wind | 9.0 | 720 | > th | dose dependent | rect. | 14 | 4 |
| 601 | 91.83 | wind | 7.0 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 770 | 92.88 | atmosphere | 1000.0 | 10 | < th | dose dependent | sin | 12 | NA |
| 842 | 93.26 | wind | 7.0 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 862 | 93.39 | wind | 9.0 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 914 | 93.59 | wind | 7.0 | 1440 | < th | dose independent | rect. | 14 | 1 |