Os06g0692100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os06g0692100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 184.3 | 0.638 | 8.77 | 1.82 | 1.6 | -1.44 | 1.26 | -0.745 | 0.215 | 0.731 | 77 | 1410 | -- | -- |
| 183.54 | 0.631 | 8.76 | 1.93 | 1.59 | -1.36 | 1.26 | -- | 0.255 | 0.704 | 75.75 | 1407 | -- | -- |
| 190.14 | 0.642 | 8.78 | 1.85 | 1.58 | -1.38 | -- | -0.35 | 0.232 | 0.77 | 75.97 | 1409 | -- | -- |
| 190.22 | 0.642 | 8.76 | 1.88 | 1.59 | -1.32 | -- | -- | 0.245 | 0.764 | 75.6 | 1407 | -- | -- |
| 264.97 | 0.762 | 8.75 | 1.72 | -- | -0.959 | -- | -0.876 | 0.185 | -- | 83.02 | 51 | -- | -- |
| 218.46 | 0.693 | 8.79 | 1.77 | 1.56 | -- | 1.08 | -- | 0.136 | 0.599 | -- | -- | -- | -- |
| 223.37 | 0.7 | 8.79 | 1.73 | 1.56 | -- | -- | -- | 0.13 | 0.661 | -- | -- | -- | -- |
| 263.81 | 0.756 | 8.76 | 1.72 | -- | -1.01 | -- | -- | 0.167 | -- | 83 | 48 | -- | -- |
| 266.8 | 0.761 | 8.71 | -- | 1.57 | -1.73 | -- | -- | 0.238 | 0.758 | 85 | 1556 | -- | -- |
| 375.92 | 0.906 | 8.76 | 1.79 | -- | -- | -- | -- | 0.157 | -- | -- | -- | -- | -- |
| 302.3 | 0.813 | 8.83 | -- | 1.59 | -- | -- | -- | -0.0628 | 0.713 | -- | -- | -- | -- |
| 341.81 | 0.861 | 8.8 | -- | -- | -1.05 | -- | -- | -0.0191 | -- | 83.9 | 52 | -- | -- |
| 460.06 | 1 | 8.8 | -- | -- | -- | -- | -- | -0.0407 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 180.42 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 6 | 12 |
| 3 | 180.56 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 6 | 13 |
| 11 | 180.90 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 21 | 181.30 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 22 | 181.32 | humidity | 80.0 | 1440 | < th | dose independent | sin | 0 | NA |
| 23 | 181.33 | humidity | 80.0 | 1440 | > th | dose independent | sin | 0 | NA |
| 26 | 181.46 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 10 | 5 |
| 35 | 181.68 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 59 | 182.22 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 66 | 182.34 | humidity | 70.0 | 1440 | > th | dose dependent | sin | 23 | NA |
| 88 | 182.78 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 89 | 182.78 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 7 | 17 |
| 94 | 182.86 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 5 | 14 |
| 109 | 183.03 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 8 | 9 |
| 509 | 186.13 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 21 | 22 |
| 568 | 186.40 | humidity | 70.0 | 1440 | > th | dose dependent | no | NA | NA |
| 657 | 186.67 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 683 | 186.74 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 776 | 187.12 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 852 | 187.54 | humidity | 80.0 | 1440 | < th | dose independent | no | NA | NA |
| 861 | 187.56 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 15 | 9 |
| 909 | 187.82 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 10 | 23 |
| 910 | 187.83 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 11 | 5 |
| 937 | 187.95 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 952 | 188.00 | humidity | 80.0 | 1440 | > th | dose independent | no | NA | NA |
| 975 | 188.10 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 995 | 188.15 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 1000 | 188.17 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 24 | 4 |