FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0691700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.91 (0.0421) R2 : 0.125
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.27 (0.293) R2dE : 0.116 R2E : 0.118
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.145 (0.0889) R2dN8 : 0.0066 R2N8 : 0.0087
σ : 0.791
deviance : 288.42
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 29.56
memory length : 8
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 13
open length of G : 0.885

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
279.91 0.786 2.91 -0.00342 0.12 1.8 -0.177 4.44 -0.169 22 30 10 13 0.948
287.04 0.789 2.91 -0.00978 0.125 2.34 -0.31 -- -0.16 22.8 29.99 9 13 0.934
280.03 0.779 2.91 0.00394 0.121 1.8 -- 4.48 -0.169 22.1 30.04 10 13 0.947
287.48 0.79 2.91 -0.0116 0.123 2.35 -- -- -0.162 22.7 30.13 9 13 0.933
279.51 0.779 2.9 0.000546 -- 1.72 -- 5.02 -0.159 -- 30 7 13 0.867
324.16 0.844 2.92 0.0534 0.136 -- 0.594 -- -0.189 15.6 -- -- -- --
324.94 0.844 2.92 0.0626 0.161 -- -- -- -0.185 17.4 -- -- -- --
288.42 0.791 2.91 0.0121 -- 2.27 -- -- -0.138 -- 29.64 8 13 0.867
287.42 0.79 2.92 -- 0.132 2.36 -- -- -0.181 22.5 30.33 9 13 0.93
326.3 0.844 2.92 0.0571 -- -- -- -- -0.189 -- -- -- -- --
325.05 0.843 2.93 -- 0.16 -- -- -- -0.192 17.4 -- -- -- --
288.42 0.791 2.91 -- -- 2.27 -- -- -0.145 -- 29.56 8 13 0.885
326.39 0.843 2.92 -- -- -- -- -- -0.195 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 281.85 radiation 30.0 10 > th dose independent rect. 13 1
6 287.40 wind 1.0 10 < th dose dependent rect. 13 10
25 289.24 temperature 25.0 10 > th dose dependent rect. 13 1
33 290.20 wind 3.0 90 > th dose dependent rect. 4 1
37 290.62 humidity 70.0 10 < th dose independent rect. 13 1
45 291.60 wind 1.0 10 < th dose independent rect. 13 10
50 291.70 humidity 90.0 10 < th dose dependent rect. 13 1
65 292.92 wind 3.0 90 > th dose independent rect. 4 1
88 293.51 radiation 10.0 90 > th dose dependent rect. 12 2
91 293.66 radiation 1.0 10 > th dose dependent rect. 13 1
96 293.79 temperature 25.0 10 > th dose independent rect. 13 1
99 293.90 humidity 60.0 90 < th dose independent rect. 12 1
141 294.83 humidity 60.0 90 < th dose dependent rect. 12 1
212 297.33 wind 9.0 10 < th dose dependent rect. 15 22
228 298.09 wind 5.0 90 < th dose dependent rect. 12 1
306 300.83 wind 1.0 10 < th dose independent rect. 14 4
311 300.87 wind 1.0 10 < th dose dependent rect. 14 4
322 301.03 wind 1.0 10 < th dose independent rect. 14 2
324 301.03 wind 1.0 10 < th dose dependent rect. 14 2
347 301.38 radiation 30.0 10 > th dose independent sin 13 NA
364 301.56 wind 5.0 90 < th dose independent rect. 12 2
370 301.62 precipitation 0.1 90 < th dose independent rect. 13 1
372 301.62 precipitation 0.1 90 < th dose dependent rect. 13 1
470 302.83 wind 7.0 10 < th dose independent rect. 13 1
487 303.15 atmosphere 1005.0 10 < th dose independent rect. 12 3
492 303.17 temperature 15.0 10 > th dose independent rect. 14 23
532 303.29 atmosphere 1005.0 90 < th dose independent rect. 12 1
562 303.53 temperature 10.0 10 > th dose independent rect. 13 1
564 303.53 atmosphere 995.0 10 > th dose independent rect. 13 1
569 303.53 wind 9.0 10 < th dose independent rect. 14 23
591 303.61 temperature 10.0 1440 > th dose independent rect. 14 1
595 303.61 temperature 10.0 1440 > th dose independent rect. 15 23
620 303.95 wind 5.0 10 < th dose independent rect. 15 22
702 304.55 precipitation 0.1 10 < th dose independent rect. 14 23
703 304.55 precipitation 0.1 10 < th dose dependent rect. 14 23
720 304.68 wind 3.0 10 > th dose independent rect. 13 1
744 304.89 wind 5.0 10 < th dose independent rect. 15 9
792 305.15 atmosphere 1015.0 10 < th dose dependent rect. 13 1
931 305.87 temperature 10.0 90 > th dose dependent rect. 14 22
959 306.01 wind 1.0 10 < th dose independent rect. 22 1
962 306.01 wind 1.0 10 < th dose dependent rect. 22 1