FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0691200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Thaumatin-like protein precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.36 (0.0516) R2 : 0.094
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.6 (0.691) R2dE : 0.0879 R2E : 0.088
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.167 (0.109) R2dN8 : 0.00604 R2N8 : 0.00612
σ : 0.97
deviance : 433.52
__
_____
C
peak time of C : --
E
wheather : precipitation
threshold : 0.5
memory length : 280
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.09
open length of G : 0.853

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
418.77 0.961 3.38 -0.764 0.0202 1.87 0.952 -8.14 -0.242 5.39 0.1103 234 2.1 1.02
419.89 0.954 3.37 -0.715 0.0162 4.38 0.744 -- -0.239 6.44 -0.0001134 283 2.05 0.617
420.46 0.955 3.38 -0.788 0.0635 1.87 -- -7.71 -0.24 9.38 0.2857 303 2.07 1.09
421.29 0.956 3.37 -0.705 0.0174 4.36 -- -- -0.24 6.45 -0.0001439 283 2.05 0.616
420.68 0.955 3.39 -0.792 -- 1.88 -- -7.69 -0.246 -- 0.2711 317 2.07 1.09
458.18 1 3.38 -0.801 0.101 -- 0.249 -- -0.282 6.69 -- -- -- --
458.33 1 3.38 -0.797 0.102 -- -- -- -0.282 7.05 -- -- -- --
421.26 0.956 3.37 -0.705 -- 4.36 -- -- -0.24 -- -0.0001741 283 2.05 0.616
433.47 0.97 3.35 -- 0.0283 4.55 -- -- -0.169 7.38 0.5 249 2.1 0.853
458.88 1 3.38 -0.795 -- -- -- -- -0.281 -- -- -- -- --
475.06 1.02 3.36 -- 0.0942 -- -- -- -0.194 7.59 -- -- -- --
433.52 0.97 3.36 -- -- 4.6 -- -- -0.167 -- 0.5 280 2.09 0.853
475.53 1.02 3.36 -- -- -- -- -- -0.192 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 419.24 precipitation 0.1 270 > th dose independent rect. 2 1
2 419.24 precipitation 0.1 270 > th dose dependent rect. 2 1
3 426.05 atmosphere 1005.0 90 > th dose dependent rect. 12 2
10 432.51 radiation 40.0 10 < th dose independent sin 13 NA
11 432.59 radiation 1.0 10 > th dose dependent rect. 12 18
12 433.20 wind 5.0 10 > th dose dependent rect. 14 1
14 433.69 radiation 1.0 10 > th dose dependent rect. 12 4
16 433.70 radiation 1.0 10 > th dose dependent rect. 12 7
32 434.00 radiation 40.0 10 < th dose dependent rect. 6 21
33 434.10 atmosphere 1005.0 90 > th dose independent rect. 12 1
55 434.75 wind 9.0 10 > th dose independent rect. 13 1
67 434.75 wind 9.0 10 > th dose dependent rect. 13 1
80 434.88 radiation 30.0 10 > th dose independent rect. 12 2
81 434.90 radiation 30.0 30 > th dose dependent rect. 12 21
126 435.45 radiation 10.0 90 > th dose dependent rect. 12 1
128 435.58 radiation 20.0 90 > th dose independent rect. 12 1
131 435.69 wind 1.0 10 < th dose dependent rect. 4 1
152 435.95 radiation 20.0 10 < th dose independent rect. 6 21
162 436.39 radiation 20.0 90 < th dose independent rect. 5 22
167 436.80 wind 1.0 10 < th dose independent rect. 4 1
171 436.97 radiation 40.0 30 < th dose independent rect. 5 22
178 437.21 radiation 40.0 90 < th dose dependent rect. 5 22
180 437.30 wind 3.0 10 > th dose independent rect. 12 2
199 437.56 radiation 1.0 10 > th dose dependent rect. 12 2
228 437.85 wind 3.0 10 > th dose dependent rect. 12 3
253 437.97 humidity 90.0 4320 > th dose dependent rect. 2 1
284 438.34 precipitation 0.1 10 > th dose independent rect. 3 1
288 438.34 precipitation 0.1 10 > th dose dependent rect. 3 1
293 438.36 radiation 1.0 30 > th dose independent rect. 16 20
320 439.00 atmosphere 995.0 30 > th dose dependent rect. 12 17
322 439.03 radiation 30.0 10 > th dose independent rect. 12 20
348 439.33 radiation 30.0 10 > th dose dependent sin 13 NA
377 439.70 wind 1.0 90 > th dose dependent rect. 12 1
386 439.87 humidity 60.0 10 > th dose independent rect. 12 2
395 440.00 humidity 80.0 90 < th dose independent rect. 12 1
399 440.08 wind 9.0 10 < th dose independent rect. 6 6
400 440.09 atmosphere 1000.0 10 > th dose independent rect. 12 18
413 440.27 radiation 40.0 10 < th dose dependent sin 16 NA
414 440.31 radiation 10.0 10 < th dose independent rect. 10 17
415 440.31 humidity 50.0 270 > th dose independent rect. 9 19
432 440.54 atmosphere 1000.0 270 > th dose independent rect. 9 19
451 440.60 radiation 1.0 10 > th dose dependent sin 15 NA
452 440.61 wind 1.0 270 > th dose independent rect. 13 11
453 440.61 radiation 1.0 90 < th dose dependent sin 9 NA
455 440.64 radiation 1.0 720 < th dose dependent rect. 17 12
457 440.66 atmosphere 1010.0 270 < th dose independent rect. 5 3
458 440.66 radiation 1.0 30 > th dose independent rect. 5 7
470 440.68 precipitation 0.1 270 < th dose independent rect. 13 11
472 440.68 precipitation 0.1 270 < th dose dependent rect. 13 11
474 440.71 atmosphere 1000.0 10 > th dose independent rect. 6 6
476 440.73 temperature 30.0 10 < th dose independent rect. 6 6
478 440.73 radiation 1.0 720 < th dose dependent rect. 16 14
479 440.74 humidity 50.0 10 > th dose independent rect. 12 18
485 440.78 radiation 1.0 10 > th dose independent rect. 12 4
487 440.80 wind 9.0 30 < th dose independent rect. 12 17
489 440.80 wind 9.0 270 < th dose independent rect. 9 19
491 440.85 temperature 15.0 90 > th dose independent rect. 5 7
493 440.87 radiation 20.0 270 < th dose dependent rect. 5 4
496 440.90 precipitation 0.1 10 < th dose independent rect. 6 6
497 440.90 precipitation 0.1 10 < th dose dependent rect. 6 6
498 440.91 temperature 30.0 270 < th dose independent rect. 4 5
499 440.91 atmosphere 1000.0 270 > th dose independent rect. 4 5
501 440.95 wind 9.0 270 < th dose independent rect. 4 5
502 440.95 temperature 10.0 270 > th dose independent rect. 4 5
504 440.95 humidity 50.0 270 > th dose independent rect. 4 5
506 440.95 atmosphere 1015.0 270 < th dose independent rect. 4 5
507 440.95 temperature 10.0 10 > th dose independent rect. 6 6
510 440.95 atmosphere 1015.0 10 < th dose independent rect. 6 6
511 440.95 temperature 10.0 10 > th dose independent rect. 12 18
512 440.95 temperature 10.0 270 > th dose independent rect. 9 19
514 440.96 precipitation 0.1 30 < th dose independent rect. 12 17
515 440.96 precipitation 0.1 30 < th dose dependent rect. 12 17
519 440.99 precipitation 0.1 270 < th dose independent rect. 4 5
520 440.99 precipitation 0.1 270 < th dose dependent rect. 4 5
521 441.02 temperature 15.0 270 > th dose independent rect. 13 11
525 441.06 precipitation 0.1 270 < th dose independent rect. 9 19
527 441.06 precipitation 0.1 270 < th dose dependent rect. 9 19
528 441.07 humidity 50.0 270 > th dose independent rect. 24 14
539 441.18 radiation 20.0 90 < th dose independent rect. 5 8
563 441.28 radiation 20.0 10 < th dose dependent rect. 14 13
573 441.32 humidity 50.0 90 > th dose independent rect. 11 18
600 441.39 temperature 15.0 10 > th dose independent rect. 16 11
608 441.45 wind 9.0 10 < th dose dependent rect. 6 6
620 441.54 radiation 1.0 90 > th dose independent sin 9 NA
652 441.63 radiation 20.0 270 < th dose dependent rect. 5 8
658 441.69 temperature 10.0 10 > th dose dependent rect. 5 7
661 441.72 atmosphere 1000.0 270 > th dose independent rect. 14 10
675 441.81 wind 7.0 270 < th dose independent rect. 18 11
676 441.85 temperature 15.0 90 > th dose independent rect. 5 22
678 441.86 radiation 20.0 270 < th dose independent rect. 5 3
688 441.90 atmosphere 1015.0 270 < th dose independent rect. 24 13
692 441.91 temperature 10.0 270 > th dose independent rect. 24 13
693 441.91 atmosphere 995.0 270 > th dose independent rect. 24 13
697 441.94 wind 9.0 270 < th dose independent rect. 24 13
700 441.97 humidity 50.0 270 > th dose dependent rect. 4 5
707 442.01 precipitation 0.1 270 < th dose independent rect. 24 13
708 442.01 wind 9.0 90 < th dose dependent rect. 5 7
709 442.01 precipitation 0.1 270 < th dose dependent rect. 24 13
729 442.04 wind 1.0 270 > th dose independent rect. 9 19
779 442.17 temperature 10.0 1440 > th dose independent rect. 6 7
782 442.17 atmosphere 995.0 1440 > th dose independent rect. 6 7
784 442.17 temperature 10.0 1440 > th dose independent rect. 13 17
796 442.20 temperature 10.0 270 > th dose dependent rect. 4 5
800 442.25 atmosphere 1015.0 10 < th dose independent rect. 12 17
806 442.29 temperature 10.0 10 > th dose dependent rect. 16 20
811 442.32 humidity 50.0 270 > th dose dependent rect. 18 10
820 442.36 radiation 1.0 90 < th dose independent sin 9 NA
821 442.36 atmosphere 1015.0 270 < th dose independent rect. 9 19
823 442.37 humidity 50.0 90 > th dose independent rect. 12 1
830 442.39 humidity 70.0 270 > th dose independent rect. 5 3
841 442.40 temperature 30.0 10 < th dose independent rect. 6 15
849 442.44 radiation 20.0 90 < th dose independent rect. 6 5
864 442.45 temperature 10.0 270 > th dose dependent rect. 5 3
866 442.46 humidity 60.0 10 > th dose dependent rect. 20 10
882 442.55 atmosphere 1000.0 270 > th dose independent rect. 19 10
888 442.58 wind 9.0 90 < th dose independent rect. 12 1
890 442.58 wind 1.0 270 > th dose independent rect. 24 14
896 442.60 wind 5.0 90 < th dose independent rect. 20 10
899 442.60 atmosphere 995.0 270 > th dose dependent rect. 9 5
905 442.62 atmosphere 995.0 90 > th dose independent rect. 13 23
917 442.65 radiation 30.0 90 < th dose independent rect. 15 11
922 442.67 wind 9.0 270 < th dose dependent rect. 5 4
935 442.72 radiation 20.0 10 < th dose dependent rect. 10 17
946 442.75 atmosphere 1005.0 10 < th dose dependent rect. 3 4
948 442.76 temperature 30.0 10 < th dose independent rect. 6 21
950 442.77 radiation 10.0 10 < th dose independent sin 17 NA
978 442.80 radiation 40.0 270 < th dose independent rect. 4 5