Os06g0690700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Potential cadmium/zinc-transporting ATPase HMA1 (EC 3.6.3.3) (EC 3.6.3.5).
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Os06g0690700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Potential cadmium/zinc-transporting ATPase HMA1 (EC 3.6.3.3) (EC 3.6.3.5).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.98 | 0.262 | 11.5 | -0.742 | 1.66 | -1.52 | -0.0844 | 2.88 | 0.0131 | 5.25 | 49.99 | 266 | -- | -- |
| 31.95 | 0.263 | 11.6 | -0.808 | 1.67 | -0.871 | -0.158 | -- | 0.0124 | 5.29 | 50.03 | 272 | -- | -- |
| 31 | 0.259 | 11.5 | -0.743 | 1.66 | -1.51 | -- | 2.91 | 0.0141 | 5.25 | 49.91 | 265 | -- | -- |
| 31.98 | 0.263 | 11.6 | -0.803 | 1.67 | -0.84 | -- | -- | 0.017 | 5.29 | 50.46 | 275 | -- | -- |
| 81.19 | 0.42 | 11.5 | -0.75 | -- | -1.46 | -- | -0.34 | 0.132 | -- | 75 | 448 | -- | -- |
| 36.12 | 0.282 | 11.5 | -0.874 | 1.77 | -- | 0.192 | -- | 0.0424 | 5.33 | -- | -- | -- | -- |
| 36.22 | 0.282 | 11.5 | -0.874 | 1.78 | -- | -- | -- | 0.0415 | 5.32 | -- | -- | -- | -- |
| 81.3 | 0.42 | 11.6 | -0.743 | -- | -1.47 | -- | -- | 0.158 | -- | 74.78 | 442 | -- | -- |
| 48.74 | 0.325 | 11.5 | -- | 1.61 | -0.943 | -- | -- | 0.089 | 5.31 | 52 | 287 | -- | -- |
| 200.77 | 0.662 | 11.6 | -0.813 | -- | -- | -- | -- | 0.0856 | -- | -- | -- | -- | -- |
| 56.34 | 0.351 | 11.5 | -- | 1.76 | -- | -- | -- | 0.139 | 5.34 | -- | -- | -- | -- |
| 95.85 | 0.456 | 11.5 | -- | -- | -1.48 | -- | -- | 0.242 | -- | 74.45 | 442 | -- | -- |
| 218.2 | 0.689 | 11.6 | -- | -- | -- | -- | -- | 0.176 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.76 | humidity | 80 | 10 | < th | dose dependent | sin | 11 | NA |
| 5 | 30.09 | humidity | 50 | 270 | > th | dose independent | rect. | 9 | 13 |
| 7 | 30.11 | humidity | 90 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 14 | 30.26 | humidity | 90 | 10 | < th | dose dependent | rect. | 16 | 15 |
| 17 | 30.33 | humidity | 90 | 10 | < th | dose dependent | rect. | 16 | 17 |
| 23 | 30.41 | radiation | 1 | 270 | < th | dose independent | rect. | 15 | 14 |
| 24 | 30.41 | humidity | 90 | 270 | < th | dose dependent | rect. | 13 | 20 |
| 31 | 30.46 | radiation | 1 | 270 | < th | dose dependent | rect. | 15 | 14 |
| 44 | 30.54 | humidity | 80 | 270 | < th | dose dependent | rect. | 15 | 2 |
| 45 | 30.54 | humidity | 90 | 10 | < th | dose dependent | rect. | 16 | 12 |
| 53 | 30.57 | humidity | 90 | 90 | < th | dose dependent | rect. | 16 | 4 |
| 68 | 30.61 | radiation | 1 | 270 | < th | dose independent | rect. | 9 | 20 |
| 71 | 30.62 | humidity | 90 | 10 | < th | dose dependent | rect. | 16 | 5 |
| 73 | 30.63 | radiation | 1 | 270 | < th | dose independent | rect. | 7 | 22 |
| 93 | 30.69 | radiation | 1 | 270 | < th | dose dependent | rect. | 9 | 20 |
| 99 | 30.70 | radiation | 1 | 270 | < th | dose dependent | rect. | 7 | 22 |
| 100 | 30.71 | humidity | 90 | 10 | < th | dose dependent | rect. | 16 | 10 |
| 108 | 30.73 | humidity | 60 | 270 | > th | dose independent | rect. | 17 | 12 |
| 139 | 30.81 | radiation | 1 | 270 | > th | dose independent | rect. | 10 | 23 |
| 150 | 30.84 | humidity | 50 | 270 | > th | dose independent | rect. | 7 | 23 |
| 178 | 30.89 | radiation | 1 | 270 | < th | dose dependent | rect. | 15 | 19 |
| 180 | 30.90 | humidity | 80 | 10 | < th | dose independent | rect. | 16 | 14 |
| 198 | 30.93 | humidity | 50 | 720 | > th | dose independent | rect. | 16 | 14 |
| 206 | 30.95 | humidity | 50 | 270 | < th | dose independent | rect. | 12 | 5 |
| 208 | 30.95 | humidity | 50 | 270 | < th | dose dependent | rect. | 12 | 4 |
| 212 | 30.96 | humidity | 50 | 270 | < th | dose independent | rect. | 13 | 3 |
| 241 | 30.97 | humidity | 50 | 270 | < th | dose independent | sin | 17 | NA |
| 290 | 30.98 | humidity | 50 | 270 | < th | dose independent | sin | 15 | NA |
| 293 | 30.98 | humidity | 50 | 270 | < th | dose independent | no | NA | NA |
| 458 | 30.99 | humidity | 50 | 270 | < th | dose dependent | sin | 16 | NA |
| 524 | 31.01 | humidity | 50 | 270 | > th | dose independent | sin | 12 | NA |
| 536 | 31.01 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 12 |
| 595 | 31.02 | humidity | 50 | 270 | < th | dose dependent | no | NA | NA |
| 751 | 31.03 | humidity | 50 | 270 | > th | dose dependent | rect. | 9 | 12 |
| 764 | 31.04 | humidity | 50 | 270 | > th | dose independent | sin | 21 | NA |
| 798 | 31.05 | humidity | 70 | 90 | < th | dose independent | rect. | 16 | 4 |
| 847 | 31.06 | humidity | 50 | 270 | > th | dose independent | no | NA | NA |
| 876 | 31.09 | humidity | 70 | 270 | < th | dose independent | rect. | 14 | 6 |
| 929 | 31.13 | humidity | 80 | 10 | < th | dose independent | rect. | 16 | 17 |
| 966 | 31.17 | humidity | 50 | 720 | > th | dose independent | rect. | 16 | 6 |
| 967 | 31.17 | humidity | 70 | 270 | > th | dose independent | rect. | 15 | 13 |
| 969 | 31.17 | radiation | 1 | 270 | < th | dose dependent | no | NA | NA |
| 993 | 31.20 | humidity | 80 | 10 | < th | dose independent | rect. | 16 | 12 |