Os06g0690200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os06g0690200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 78.48 | 0.416 | 9.58 | 0.904 | 1.1 | -0.789 | -0.26 | -1.55 | 0.668 | 0.5 | 25.53 | 741 | -- | -- |
| 79.09 | 0.414 | 9.55 | 1.14 | 1.11 | -0.926 | -0.291 | -- | 0.725 | 0.486 | 25.63 | 757 | -- | -- |
| 78.68 | 0.413 | 9.58 | 0.927 | 1.11 | -0.788 | -- | -1.55 | 0.66 | 0.504 | 25.78 | 758 | -- | -- |
| 79.48 | 0.415 | 9.56 | 1.15 | 1.1 | -0.931 | -- | -- | 0.687 | 0.555 | 26.61 | 778 | -- | -- |
| 108.83 | 0.486 | 9.46 | 1.51 | -- | -1.56 | -- | 1.33 | 1 | -- | 21.1 | 2 | -- | -- |
| 97.7 | 0.463 | 9.55 | 0.952 | 1.03 | -- | -0.36 | -- | 0.674 | 1.58 | -- | -- | -- | -- |
| 98.21 | 0.464 | 9.55 | 0.963 | 1.03 | -- | -- | -- | 0.676 | 1.62 | -- | -- | -- | -- |
| 110.21 | 0.489 | 9.48 | 1.29 | -- | -1.5 | -- | -- | 0.94 | -- | 20.81 | 10 | -- | -- |
| 111.85 | 0.493 | 9.6 | -- | 1.07 | -0.657 | -- | -- | 0.484 | 1.09 | 29.69 | 789 | -- | -- |
| 163.29 | 0.597 | 9.54 | 1 | -- | -- | -- | -- | 0.698 | -- | -- | -- | -- | -- |
| 122.66 | 0.518 | 9.58 | -- | 1.05 | -- | -- | -- | 0.568 | 1.65 | -- | -- | -- | -- |
| 152.03 | 0.576 | 9.53 | -- | -- | -1.21 | -- | -- | 0.727 | -- | 23.2 | 12 | -- | -- |
| 189.93 | 0.643 | 9.56 | -- | -- | -- | -- | -- | 0.587 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 77.51 | humidity | 70.0 | 720 | > th | dose independent | rect. | 17 | 5 |
| 2 | 77.55 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 13 | 8 |
| 5 | 77.83 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 11 | 10 |
| 7 | 77.86 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 9 | 12 |
| 9 | 77.96 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 13 | 21 |
| 13 | 78.01 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 9 | 14 |
| 16 | 78.05 | temperature | 30.0 | 720 | < th | dose independent | sin | 17 | NA |
| 21 | 78.09 | temperature | 30.0 | 720 | < th | dose independent | rect. | 11 | 10 |
| 22 | 78.09 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 13 | 6 |
| 25 | 78.12 | humidity | 80.0 | 720 | < th | dose dependent | sin | 18 | NA |
| 26 | 78.13 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 1 | 20 |
| 32 | 78.17 | temperature | 30.0 | 720 | < th | dose independent | rect. | 11 | 16 |
| 38 | 78.23 | temperature | 30.0 | 720 | < th | dose independent | rect. | 15 | 7 |
| 39 | 78.24 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 1 | 22 |
| 44 | 78.29 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 9 | 21 |
| 45 | 78.30 | temperature | 30.0 | 720 | > th | dose independent | sin | 16 | NA |
| 58 | 78.44 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 17 | 2 |
| 59 | 78.44 | temperature | 25.0 | 720 | > th | dose dependent | sin | 19 | NA |
| 61 | 78.45 | temperature | 30.0 | 720 | > th | dose independent | rect. | 12 | 7 |
| 77 | 78.47 | temperature | 30.0 | 720 | < th | dose independent | rect. | 15 | 15 |
| 107 | 78.52 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 12 | 17 |
| 108 | 78.52 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 8 | 21 |
| 147 | 78.64 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 9 | 18 |
| 152 | 78.65 | humidity | 70.0 | 720 | > th | dose independent | rect. | 17 | 13 |
| 159 | 78.65 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 13 | 20 |
| 199 | 78.71 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 220 | 78.77 | temperature | 25.0 | 720 | > th | dose dependent | no | NA | NA |
| 245 | 78.80 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 252 | 78.81 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 348 | 78.94 | temperature | 30.0 | 720 | < th | dose independent | rect. | 9 | 14 |
| 417 | 79.04 | temperature | 30.0 | 720 | < th | dose independent | rect. | 14 | 23 |
| 422 | 79.04 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 439 | 79.05 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 460 | 79.08 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 480 | 79.11 | humidity | 50.0 | 720 | > th | dose dependent | sin | 18 | NA |
| 498 | 79.14 | temperature | 30.0 | 720 | < th | dose independent | rect. | 24 | 23 |
| 513 | 79.17 | temperature | 30.0 | 720 | < th | dose independent | rect. | 1 | 20 |
| 545 | 79.23 | humidity | 50.0 | 14400 | < th | dose independent | sin | 11 | NA |
| 555 | 79.26 | temperature | 30.0 | 720 | < th | dose independent | rect. | 20 | 23 |
| 560 | 79.27 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 15 | 20 |
| 565 | 79.28 | humidity | 60.0 | 720 | > th | dose independent | rect. | 11 | 16 |
| 585 | 79.32 | temperature | 30.0 | 720 | < th | dose independent | no | NA | NA |
| 623 | 79.36 | temperature | 30.0 | 720 | < th | dose independent | rect. | 5 | 23 |
| 626 | 79.37 | humidity | 70.0 | 720 | > th | dose independent | sin | 13 | NA |
| 661 | 79.42 | humidity | 60.0 | 720 | > th | dose independent | sin | 17 | NA |
| 675 | 79.45 | humidity | 50.0 | 720 | > th | dose dependent | sin | 21 | NA |
| 748 | 79.54 | humidity | 60.0 | 720 | < th | dose independent | rect. | 12 | 21 |
| 752 | 79.55 | humidity | 60.0 | 720 | < th | dose independent | rect. | 12 | 7 |
| 753 | 79.55 | temperature | 30.0 | 720 | < th | dose independent | rect. | 12 | 14 |
| 755 | 79.55 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 15 | 6 |
| 782 | 79.57 | temperature | 30.0 | 720 | > th | dose independent | no | NA | NA |
| 889 | 79.60 | humidity | 70.0 | 720 | < th | dose independent | rect. | 16 | 3 |
| 891 | 79.60 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 15 | 2 |
| 914 | 79.63 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 4 |
| 939 | 79.67 | humidity | 60.0 | 720 | < th | dose independent | sin | 17 | NA |
| 950 | 79.69 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 3 |
| 952 | 79.69 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 19 |
| 967 | 79.71 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 968 | 79.71 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 11 | 7 |
| 987 | 79.74 | humidity | 70.0 | 720 | < th | dose independent | sin | 14 | NA |