Os06g0686700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os06g0686700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.07 | 0.258 | 16.9 | -0.301 | 0.264 | -1.08 | 0.0945 | -1.11 | 0.37 | 23.2 | 18.9 | 5486 | -- | -- |
| 31.27 | 0.26 | 16.9 | -0.356 | 0.269 | -0.754 | 0.111 | -- | 0.365 | 23 | 18.7 | 5320 | -- | -- |
| 29.94 | 0.255 | 16.9 | -0.314 | 0.278 | -1.19 | -- | -1.3 | 0.372 | 23.1 | 18.72 | 5788 | -- | -- |
| 31.27 | 0.26 | 16.9 | -0.37 | 0.261 | -0.764 | -- | -- | 0.355 | 23.1 | 18.9 | 5366 | -- | -- |
| 34.23 | 0.272 | 16.9 | -0.298 | -- | -1.16 | -- | -1.24 | 0.374 | -- | 18.7 | 5292 | -- | -- |
| 39.92 | 0.296 | 16.9 | 0.124 | 0.281 | -- | 0.134 | -- | 0.543 | 23.5 | -- | -- | -- | -- |
| 39.99 | 0.296 | 16.9 | 0.119 | 0.281 | -- | -- | -- | 0.542 | 23.3 | -- | -- | -- | -- |
| 34.32 | 0.273 | 16.9 | -0.209 | -- | -0.616 | -- | -- | 0.341 | -- | 21.69 | 2325 | -- | -- |
| 33.01 | 0.268 | 16.9 | -- | 0.264 | -0.596 | -- | -- | 0.438 | 23 | 19 | 3470 | -- | -- |
| 44.93 | 0.313 | 16.9 | 0.126 | -- | -- | -- | -- | 0.545 | -- | -- | -- | -- | -- |
| 40.37 | 0.297 | 16.9 | -- | 0.282 | -- | -- | -- | 0.529 | 23.4 | -- | -- | -- | -- |
| 34.76 | 0.275 | 16.9 | -- | -- | -0.536 | -- | -- | 0.387 | -- | 21.7 | 2310 | -- | -- |
| 45.36 | 0.314 | 16.9 | -- | -- | -- | -- | -- | 0.531 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.54 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 3 | 30.36 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 4 | 30.36 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 5 | 30.50 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 6 | 30.50 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 7 | 30.52 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 9 | 30.53 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 15 | 30.60 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 16 | 30.60 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 21 | 30.68 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 22 | 30.68 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 23 | 3 |
| 29 | 30.74 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 31 | 30.75 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 32 | 30.75 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 17 | 13 |
| 44 | 30.78 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 46 | 30.78 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 21 | 8 |
| 67 | 30.81 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 77 | 30.82 | temperature | 20.0 | 4320 | < th | dose dependent | sin | 12 | NA |
| 83 | 30.83 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 90 | 30.84 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 96 | 30.85 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 12 | 9 |
| 157 | 30.94 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 12 | 2 |
| 163 | 30.95 | wind | 1.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 165 | 30.95 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 6 |
| 176 | 30.96 | radiation | 30.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 184 | 30.96 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 20 | 19 |
| 185 | 30.97 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 186 | 30.97 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 204 | 30.99 | wind | 9.0 | 14400 | < th | dose independent | rect. | 6 | 6 |
| 205 | 30.99 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 213 | 31.00 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 24 | 15 |
| 218 | 31.01 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 220 | 31.01 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 2 | 13 |
| 227 | 31.02 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 6 |
| 229 | 31.02 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 6 |
| 230 | 31.02 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 6 |
| 236 | 31.03 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 24 | 10 |
| 245 | 31.04 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 3 | 2 |
| 255 | 31.05 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 12 | 10 |
| 258 | 31.05 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 3 | 9 |
| 299 | 31.07 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 21 | 22 |
| 300 | 31.08 | wind | 1.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 301 | 31.08 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 306 | 31.08 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 317 | 31.08 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 23 | 20 |
| 324 | 31.09 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 326 | 31.09 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 13 | 3 |
| 327 | 31.09 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 337 | 31.09 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 21 | 12 |
| 357 | 31.10 | temperature | 20.0 | 4320 | < th | dose dependent | no | NA | NA |
| 385 | 31.11 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 10 | 14 |
| 389 | 31.11 | humidity | 60.0 | 43200 | < th | dose dependent | sin | 6 | NA |
| 400 | 31.12 | atmosphere | 1015.0 | 14400 | < th | dose independent | sin | 18 | NA |
| 401 | 31.12 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 402 | 31.12 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 459 | 31.14 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 9 | 14 |
| 475 | 31.15 | atmosphere | 1015.0 | 14400 | > th | dose independent | sin | 17 | NA |
| 480 | 31.15 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 10 | 4 |
| 481 | 31.15 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 18 | 4 |
| 500 | 31.15 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 513 | 31.16 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 8 | 9 |
| 536 | 31.16 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 11 | 4 |
| 537 | 31.16 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 9 | 4 |
| 546 | 31.16 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 4 | 23 |
| 548 | 31.17 | wind | 9.0 | 14400 | < th | dose independent | rect. | 9 | 3 |
| 558 | 31.17 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 24 | 10 |
| 585 | 31.18 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 8 | 9 |
| 603 | 31.18 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 8 | 6 |
| 659 | 31.19 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 4 | 20 |
| 697 | 31.20 | atmosphere | 1015.0 | 14400 | > th | dose dependent | sin | 0 | NA |
| 698 | 31.20 | atmosphere | 1015.0 | 14400 | > th | dose dependent | no | NA | NA |
| 709 | 31.20 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 21 | 16 |
| 710 | 31.20 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 4 | 18 |
| 732 | 31.20 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 16 | 22 |
| 747 | 31.20 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 14 | 23 |
| 785 | 31.21 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 799 | 31.21 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 17 |
| 814 | 31.21 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 23 | 21 |
| 829 | 31.22 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 858 | 31.22 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 19 | 21 |
| 930 | 31.23 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 13 | 19 |
| 971 | 31.24 | atmosphere | 1015.0 | 14400 | > th | dose dependent | sin | 12 | NA |
| 972 | 31.24 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 973 | 31.24 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 23 | 3 |
| 978 | 31.24 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 17 | 14 |