Os06g0685700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Auxin response factor 16.
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Os06g0685700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Auxin response factor 16.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.79 | 0.289 | 11.9 | 0.876 | 0.642 | 1.17 | -0.415 | -0.0936 | 0.123 | 12.4 | 23.79 | 714 | -- | -- |
| 37.76 | 0.286 | 11.9 | 0.856 | 0.643 | 1.19 | -0.408 | -- | 0.122 | 12.4 | 23.51 | 720 | -- | -- |
| 38.43 | 0.289 | 11.9 | 0.889 | 0.641 | 1.18 | -- | -0.259 | 0.12 | 12.4 | 23.5 | 729 | -- | -- |
| 38.51 | 0.289 | 11.9 | 0.85 | 0.637 | 1.23 | -- | -- | 0.115 | 12.4 | 23.4 | 730 | -- | -- |
| 59.91 | 0.36 | 11.9 | 0.999 | -- | 1.42 | -- | -0.393 | 0.227 | -- | 26.3 | 866 | -- | -- |
| 57.18 | 0.354 | 11.9 | 0.545 | 0.756 | -- | -0.491 | -- | -0.0956 | 12.1 | -- | -- | -- | -- |
| 58.22 | 0.357 | 11.9 | 0.526 | 0.758 | -- | -- | -- | -0.0979 | 12.1 | -- | -- | -- | -- |
| 60.12 | 0.361 | 11.9 | 0.926 | -- | 1.45 | -- | -- | 0.214 | -- | 26.15 | 868 | -- | -- |
| 55.17 | 0.346 | 11.9 | -- | 0.686 | 0.848 | -- | -- | -0.0307 | 12.2 | 23.34 | 610 | -- | -- |
| 94.42 | 0.454 | 12 | 0.502 | -- | -- | -- | -- | -0.109 | -- | -- | -- | -- | -- |
| 65.51 | 0.379 | 11.9 | -- | 0.751 | -- | -- | -- | -0.156 | 12 | -- | -- | -- | -- |
| 79.92 | 0.416 | 11.9 | -- | -- | 1.07 | -- | -- | 0.0374 | -- | 26 | 833 | -- | -- |
| 101.07 | 0.469 | 12 | -- | -- | -- | -- | -- | -0.164 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.31 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 15 |
| 4 | 36.46 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 17 |
| 29 | 36.88 | temperature | 15 | 720 | > th | dose dependent | sin | 9 | NA |
| 39 | 36.94 | temperature | 25 | 720 | < th | dose dependent | sin | 10 | NA |
| 58 | 37.23 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 19 |
| 75 | 37.34 | temperature | 20 | 720 | > th | dose independent | sin | 10 | NA |
| 82 | 37.37 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 14 |
| 84 | 37.38 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 22 |
| 94 | 37.43 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 16 |
| 122 | 37.56 | temperature | 20 | 720 | < th | dose independent | sin | 10 | NA |
| 123 | 37.58 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 16 |
| 124 | 37.58 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 18 |
| 277 | 38.14 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 21 |
| 309 | 38.23 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 313 | 38.24 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 7 |
| 411 | 38.53 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 10 |
| 425 | 38.56 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 5 |
| 496 | 38.71 | temperature | 20 | 720 | < th | dose independent | rect. | 9 | 22 |
| 527 | 38.77 | temperature | 20 | 720 | > th | dose independent | rect. | 8 | 23 |
| 532 | 38.79 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 590 | 38.91 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 23 |
| 599 | 38.94 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 637 | 39.01 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 23 |
| 721 | 39.15 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 827 | 39.30 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 851 | 39.33 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 23 |
| 863 | 39.35 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 23 |
| 920 | 39.45 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 932 | 39.46 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 965 | 39.51 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 5 |