Os06g0682700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os06g0682700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.68 | 0.281 | 9.49 | 1.9 | 0.253 | -0.504 | 0.0942 | 3.3 | 0.303 | 8.06 | 24.1 | 1753 | -- | -- |
| 39.79 | 0.294 | 9.58 | 1.08 | 0.291 | -0.216 | -0.0271 | -- | 0.153 | 7.73 | 24.93 | 14889 | -- | -- |
| 35.7 | 0.278 | 9.49 | 1.89 | 0.255 | -0.5 | -- | 3.26 | 0.301 | 8.01 | 24.1 | 1741 | -- | -- |
| 39.77 | 0.294 | 9.58 | 1.18 | 0.306 | -0.261 | -- | -- | 0.142 | 7.59 | 21.58 | 24267 | -- | -- |
| 38.81 | 0.29 | 9.49 | 1.94 | -- | -0.588 | -- | 3.51 | 0.331 | -- | 24.31 | 1877 | -- | -- |
| 41.3 | 0.301 | 9.61 | 0.958 | 0.304 | -- | -0.0201 | -- | 0.0342 | 7.75 | -- | -- | -- | -- |
| 41.3 | 0.301 | 9.61 | 0.957 | 0.304 | -- | -- | -- | 0.0342 | 7.76 | -- | -- | -- | -- |
| 44.04 | 0.309 | 9.59 | 1.2 | -- | -0.323 | -- | -- | 0.125 | -- | 12.3 | 23684 | -- | -- |
| 51.67 | 0.335 | 9.67 | -- | 0.309 | 0.57 | -- | -- | -0.26 | 7.87 | 16.6 | 47520 | -- | -- |
| 46.3 | 0.318 | 9.61 | 0.961 | -- | -- | -- | -- | 0.0385 | -- | -- | -- | -- | -- |
| 65.46 | 0.378 | 9.63 | -- | 0.312 | -- | -- | -- | -0.0724 | 7.55 | -- | -- | -- | -- |
| 56.85 | 0.351 | 9.68 | -- | -- | 0.571 | -- | -- | -0.256 | -- | 16.5 | 47520 | -- | -- |
| 70.67 | 0.392 | 9.64 | -- | -- | -- | -- | -- | -0.0681 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.20 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 2 | 34.28 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 24 | 3 |
| 9 | 34.64 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 23 | 5 |
| 10 | 34.64 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 8 |
| 19 | 34.71 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 20 | 34.71 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 25 | 34.73 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 18 | 8 |
| 27 | 34.75 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 38 | 34.76 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 44 | 34.81 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 46 | 34.85 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 47 | 34.87 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 48 | 34.87 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 18 | 5 |
| 76 | 35.01 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 23 | 5 |
| 222 | 35.54 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 229 | 35.55 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 10 | NA |
| 260 | 35.60 | wind | 7.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 273 | 35.61 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 18 |
| 322 | 35.67 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 17 | NA |
| 377 | 35.73 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 11 | 2 |
| 420 | 35.79 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 423 | 35.79 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 21 |
| 457 | 35.83 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 20 |
| 459 | 35.84 | wind | 7.0 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 488 | 35.87 | wind | 3.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 489 | 35.87 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 491 | 35.87 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 509 | 35.88 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 4 | 21 |
| 512 | 35.89 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 10 | 22 |
| 514 | 35.89 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 545 | 35.92 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 556 | 35.93 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 16 | 10 |
| 559 | 35.93 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 602 | 35.96 | wind | 1.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 603 | 35.96 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 606 | 35.96 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 16 | 4 |
| 657 | 35.99 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 16 | 7 |
| 663 | 35.99 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 15 | 16 |
| 666 | 36.00 | humidity | 90.0 | 14400 | > th | dose independent | sin | 10 | NA |
| 699 | 36.02 | wind | 3.0 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 713 | 36.02 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 8 | 17 |
| 724 | 36.03 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 747 | 36.03 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 15 |
| 756 | 36.04 | wind | 1.0 | 43200 | < th | dose independent | rect. | 1 | 2 |
| 758 | 36.04 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 9 | 16 |
| 759 | 36.04 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 770 | 36.05 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 14 | 9 |
| 773 | 36.05 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 16 | 15 |
| 809 | 36.08 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 14 | 9 |
| 831 | 36.09 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 16 | 15 |
| 832 | 36.09 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 16 | 15 |
| 873 | 36.10 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 2 | 20 |
| 876 | 36.11 | radiation | 1.0 | 4320 | > th | dose independent | sin | 13 | NA |
| 877 | 36.11 | radiation | 1.0 | 4320 | < th | dose independent | sin | 13 | NA |
| 919 | 36.13 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 955 | 36.14 | humidity | 90.0 | 1440 | > th | dose dependent | sin | 19 | NA |
| 965 | 36.14 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 19 |
| 972 | 36.15 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 16 | 17 |
| 973 | 36.15 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 16 | 17 |
| 992 | 36.16 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 11 | 2 |