Os06g0681700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF6, transmembrane domain containing protein.
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Os06g0681700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF6, transmembrane domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.45 | 0.255 | 10.5 | -0.236 | 0.0741 | 0.711 | -0.641 | -1.3 | 0.0947 | 10.6 | 23.76 | 4636 | -- | -- |
| 30.03 | 0.255 | 10.5 | 0.0736 | 0.0964 | 0.648 | -0.627 | -- | 0.119 | 10.7 | 21.1 | 4091 | -- | -- |
| 30.97 | 0.259 | 10.5 | -0.232 | 0.103 | 0.696 | -- | -1.17 | 0.0955 | 8.3 | 23.65 | 4715 | -- | -- |
| 31.63 | 0.262 | 10.5 | 0.0605 | 0.0874 | 0.613 | -- | -- | 0.148 | 8.14 | 22.79 | 4827 | -- | -- |
| 31.51 | 0.261 | 10.5 | -0.249 | -- | 0.699 | -- | -1.19 | 0.0863 | -- | 23.46 | 4628 | -- | -- |
| 41.68 | 0.303 | 10.4 | 0.342 | 0.0443 | -- | -0.676 | -- | 0.244 | 11 | -- | -- | -- | -- |
| 43.44 | 0.309 | 10.4 | 0.313 | 0.0771 | -- | -- | -- | 0.241 | 7.69 | -- | -- | -- | -- |
| 32.14 | 0.264 | 10.5 | 0.0667 | -- | 0.605 | -- | -- | 0.146 | -- | 22.65 | 4636 | -- | -- |
| 31.69 | 0.262 | 10.5 | -- | 0.105 | 0.626 | -- | -- | 0.134 | 8.4 | 22.5 | 4825 | -- | -- |
| 43.76 | 0.309 | 10.4 | 0.314 | -- | -- | -- | -- | 0.242 | -- | -- | -- | -- | -- |
| 46.01 | 0.317 | 10.4 | -- | 0.0798 | -- | -- | -- | 0.206 | 7.42 | -- | -- | -- | -- |
| 32.23 | 0.264 | 10.5 | -- | -- | 0.633 | -- | -- | 0.12 | -- | 21.79 | 4631 | -- | -- |
| 46.35 | 0.318 | 10.4 | -- | -- | -- | -- | -- | 0.207 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.93 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 19 |
| 3 | 28.99 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 3 |
| 12 | 29.28 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 23 | 29.47 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 27 | 29.50 | temperature | 25 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 36 | 29.55 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 40 | 29.55 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 17 |
| 45 | 29.59 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 11 |
| 46 | 29.59 | temperature | 25 | 4320 | > th | dose dependent | rect. | 3 | 14 |
| 58 | 29.61 | temperature | 25 | 4320 | > th | dose dependent | sin | 22 | NA |
| 88 | 29.61 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 22 |
| 106 | 29.63 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 7 |
| 140 | 29.64 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 20 |
| 144 | 29.65 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 4 |
| 148 | 29.65 | temperature | 25 | 4320 | > th | dose dependent | rect. | 10 | 10 |
| 163 | 29.65 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 22 |
| 196 | 29.66 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 23 |
| 210 | 29.67 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 20 |
| 231 | 29.68 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 235 | 29.68 | temperature | 25 | 4320 | > th | dose dependent | rect. | 10 | 7 |
| 256 | 29.69 | temperature | 20 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 331 | 29.72 | temperature | 25 | 4320 | > th | dose dependent | rect. | 15 | 23 |
| 365 | 29.75 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 6 |
| 384 | 29.76 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 406 | 29.77 | temperature | 20 | 1440 | > th | dose dependent | sin | 6 | NA |
| 453 | 29.81 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 4 |
| 599 | 29.89 | wind | 7 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 675 | 29.93 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 676 | 29.93 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 807 | 29.98 | temperature | 10 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 885 | 30.02 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 12 |
| 936 | 30.04 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 21 |
| 958 | 30.05 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |