Os06g0681300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : PAK-box/P21-Rho-binding domain containing protein.
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Os06g0681300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : PAK-box/P21-Rho-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.13 | 0.346 | 9.15 | -0.174 | 0.802 | -0.572 | 0.497 | -1.65 | 0.291 | 1.65 | 68.97 | 4860 | -- | -- |
| 57.5 | 0.353 | 9.17 | -0.155 | 0.766 | -0.676 | 0.578 | -- | 0.204 | 1.76 | 66.89 | 4737 | -- | -- |
| 54.89 | 0.345 | 9.15 | -0.159 | 0.79 | -0.568 | -- | -1.54 | 0.276 | 1.45 | 67.97 | 4839 | -- | -- |
| 57.73 | 0.354 | 9.18 | -0.142 | 0.881 | -0.728 | -- | -- | 0.164 | 1.81 | 66.9 | 4080 | -- | -- |
| 89.83 | 0.444 | 9.15 | -0.123 | -- | -0.468 | -- | -0.631 | 0.278 | -- | 67.97 | 4839 | -- | -- |
| 66.14 | 0.381 | 9.15 | -0.108 | 0.813 | -- | 0.509 | -- | 0.275 | 1.97 | -- | -- | -- | -- |
| 67.13 | 0.384 | 9.15 | -0.123 | 0.813 | -- | -- | -- | 0.273 | 1.91 | -- | -- | -- | -- |
| 91.44 | 0.447 | 9.15 | -0.107 | -- | -0.464 | -- | -- | 0.277 | -- | 67.97 | 4839 | -- | -- |
| 58.22 | 0.355 | 9.18 | -- | 0.869 | -0.717 | -- | -- | 0.18 | 1.83 | 66.55 | 4080 | -- | -- |
| 107.03 | 0.483 | 9.15 | -0.0894 | -- | -- | -- | -- | 0.291 | -- | -- | -- | -- | -- |
| 67.52 | 0.384 | 9.15 | -- | 0.811 | -- | -- | -- | 0.286 | 1.91 | -- | -- | -- | -- |
| 91.74 | 0.448 | 9.15 | -- | -- | -0.463 | -- | -- | 0.289 | -- | 67.97 | 4839 | -- | -- |
| 107.24 | 0.483 | 9.14 | -- | -- | -- | -- | -- | 0.301 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.88 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 2 | 51.18 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 3 | 51.18 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 4 | 51.26 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 24 | 6 |
| 10 | 51.49 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 20 | 10 |
| 12 | 51.55 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 3 | 3 |
| 21 | 51.67 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 24 | 51.69 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 20 | 10 |
| 33 | 51.76 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 6 |
| 57 | 52.00 | wind | 3.0 | 14400 | < th | dose independent | rect. | 21 | 9 |
| 78 | 52.12 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 3 | 3 |
| 85 | 52.15 | wind | 3.0 | 14400 | > th | dose independent | rect. | 20 | 10 |
| 107 | 52.21 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 11 |
| 119 | 52.25 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 11 |
| 122 | 52.25 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 11 |
| 132 | 52.29 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 167 | 52.42 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 14 |
| 175 | 52.45 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 14 |
| 178 | 52.45 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 14 |
| 183 | 52.47 | wind | 3.0 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 187 | 52.50 | wind | 3.0 | 14400 | > th | dose independent | rect. | 3 | 3 |
| 194 | 52.52 | wind | 3.0 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 203 | 52.55 | wind | 3.0 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 208 | 52.56 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 215 | 52.58 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 6 |
| 217 | 52.58 | wind | 1.0 | 14400 | > th | dose dependent | sin | 9 | NA |
| 243 | 52.65 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 2 | 7 |
| 261 | 52.68 | wind | 9.0 | 14400 | < th | dose dependent | sin | 9 | NA |
| 277 | 52.71 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 8 |
| 309 | 52.77 | wind | 1.0 | 14400 | > th | dose independent | rect. | 4 | 6 |
| 381 | 53.00 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 6 |
| 388 | 53.01 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 392 | 53.03 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 8 |
| 397 | 53.04 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 12 |
| 426 | 53.13 | humidity | 60.0 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 463 | 53.21 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 1 | NA |
| 476 | 53.24 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 1 | NA |
| 479 | 53.24 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 1 | NA |
| 560 | 53.44 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 10 | 3 |
| 591 | 53.50 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 10 | 1 |
| 615 | 53.56 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 617 | 53.56 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 1 |
| 619 | 53.57 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 620 | 53.57 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 639 | 53.61 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 698 | 53.72 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 1 | NA |
| 745 | 53.83 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 764 | 53.86 | wind | 3.0 | 14400 | < th | dose independent | sin | 9 | NA |
| 780 | 53.89 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 14 | 3 |
| 794 | 53.91 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 796 | 53.92 | wind | 3.0 | 14400 | < th | dose independent | rect. | 21 | 4 |
| 825 | 53.98 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 16 |
| 854 | 54.04 | wind | 3.0 | 14400 | > th | dose independent | sin | 9 | NA |
| 855 | 54.04 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 3 |
| 857 | 54.04 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 3 |
| 863 | 54.06 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 3 |
| 886 | 54.10 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 943 | 54.18 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 7 | 3 |
| 974 | 54.23 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |