Os06g0681200 - FiT-DB

FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0681200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cupredoxin domain containing protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	4.16	(0.0665)	R²	:	0.297
β₁	:	1.67	(0.248)	R²_dD	:	0.0785	R²_D	:	-0.0515
β₂	:	0.831	(0.17)	R²_dC	:	0.0373	R²_C	:	-0.0124
β₃	:	3.02	(0.405)	R²_dE	:	0.0873	R²_E	:	-0.0307
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	1.54	(0.143)	R²_dN8	:	0.247	R²_N8	:	0.12
σ	:	1.24
deviance	:	708.85
__

_____

C
peak time of C	:	4.23
E
wheather	:	wind
threshold	:	7.063
memory length	:	1519
response mode	:	> th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	21
open length of G	:	12.5

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
693.96	1.24	4.34	2.25	0.844	8.25	-0.304	25.3	1.53	4.54	6.971	1468	21.2	12.9
786.64	1.32	4.2	1.37	0.844	2.3	-0.418	--	1.4	4.44	6.971	1468	21.2	12.9
693.79	1.23	4.34	2.26	0.841	8.35	--	25.7	1.53	4.57	6.979	1468	21.2	12.8
708.85	1.24	4.16	1.67	0.831	3.02	--	--	1.54	4.23	7.063	1519	21	12.5
731.6	1.26	4.34	2.3	--	8.39	--	25.8	1.56	--	6.983	1468	21.2	12.8
792.4	1.32	4.2	1.34	0.844	--	-0.434	--	1.38	4.38	--	--	--	--
792.9	1.32	4.2	1.34	0.842	--	--	--	1.39	4.43	--	--	--	--
744.29	1.27	4.17	1.7	--	3	--	--	1.57	--	7.3	1519	21	12.2
780.51	1.3	4.16	--	0.946	2.9	--	--	1.49	4.16	7.7	1406	21	12.2
830.91	1.35	4.2	1.38	--	--	--	--	1.41	--	--	--	--	--
840.49	1.36	4.23	--	0.867	--	--	--	1.24	4.39	--	--	--	--
817.74	1.33	4.18	--	--	2.74	--	--	1.41	--	7.711	1471	21.1	11.8
880.91	1.39	4.24	--	--	--	--	--	1.26	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	699.97	wind	7	1440	> th	dose dependent	rect.	21	13
2	700.25	wind	7	1440	> th	dose dependent	rect.	22	11
3	700.39	wind	7	1440	< th	dose independent	rect.	22	11
4	700.78	wind	7	1440	< th	dose independent	rect.	21	13
5	700.82	wind	7	1440	< th	dose independent	rect.	23	2
6	701.16	wind	5	1440	> th	dose dependent	rect.	23	1
7	701.27	wind	9	4320	> th	dose independent	rect.	19	1
8	701.27	wind	9	4320	> th	dose dependent	rect.	19	1
9	701.34	wind	7	1440	> th	dose independent	rect.	21	13
10	701.47	wind	5	1440	> th	dose dependent	rect.	21	8
11	702.07	wind	5	1440	> th	dose dependent	rect.	21	6
16	702.31	wind	5	1440	> th	dose dependent	rect.	21	4
31	704.14	wind	7	1440	< th	dose independent	rect.	22	7
35	704.41	wind	7	1440	< th	dose independent	rect.	22	9
42	704.82	wind	9	1440	> th	dose independent	rect.	19	4
58	705.01	wind	9	1440	< th	dose independent	rect.	20	9
61	705.20	wind	7	1440	> th	dose independent	rect.	22	3
64	705.38	wind	7	1440	> th	dose independent	rect.	21	8
76	705.75	wind	9	1440	< th	dose independent	rect.	20	6
77	705.80	wind	9	1440	> th	dose dependent	rect.	19	7
88	705.97	wind	9	1440	> th	dose dependent	rect.	19	4
118	706.35	wind	7	1440	> th	dose independent	rect.	22	5
201	709.40	wind	9	4320	> th	dose dependent	rect.	16	1
232	710.64	wind	9	4320	> th	dose dependent	rect.	16	7
241	710.86	wind	9	4320	> th	dose dependent	rect.	16	12
243	710.88	wind	9	4320	> th	dose dependent	rect.	16	10
261	711.34	wind	5	1440	> th	dose independent	rect.	14	18
287	711.95	wind	5	1440	> th	dose independent	sin	12	NA
291	712.12	wind	5	1440	< th	dose independent	rect.	14	18
327	712.72	wind	5	1440	< th	dose independent	sin	12	NA
330	712.73	wind	5	1440	> th	dose dependent	sin	11	NA
426	714.58	wind	9	4320	> th	dose independent	rect.	16	1
456	715.11	wind	9	4320	> th	dose dependent	rect.	12	1
457	715.11	wind	5	1440	> th	dose dependent	rect.	15	19
669	718.72	wind	5	1440	> th	dose independent	rect.	21	20
676	718.83	wind	9	4320	< th	dose independent	rect.	16	1
751	719.65	wind	5	1440	< th	dose independent	rect.	21	20
762	719.83	wind	9	4320	< th	dose independent	rect.	16	10
765	719.88	wind	5	1440	> th	dose dependent	rect.	21	20
783	720.09	wind	9	4320	< th	dose independent	rect.	16	13
788	720.18	wind	9	4320	< th	dose independent	rect.	16	7
798	720.29	wind	9	4320	> th	dose dependent	sin	12	NA
840	720.66	wind	9	4320	< th	dose independent	rect.	16	15
893	721.17	wind	5	1440	> th	dose independent	rect.	21	22
947	721.65	wind	5	1440	< th	dose independent	rect.	21	22