Os06g0680900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Exostosin-like family protein.
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Os06g0680900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Exostosin-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.76 | 0.296 | 8.31 | -0.315 | 0.263 | 0.667 | 0.297 | -0.0547 | -0.366 | 13.8 | 1.51 | 7255 | -- | -- |
| 39.76 | 0.294 | 8.31 | -0.308 | 0.265 | 0.674 | 0.297 | -- | -0.366 | 13.8 | 1.5 | 7257 | -- | -- |
| 40.1 | 0.295 | 8.31 | -0.311 | 0.263 | 0.666 | -- | -0.0638 | -0.365 | 13.7 | 1.51 | 7265 | -- | -- |
| 40.1 | 0.295 | 8.31 | -0.292 | 0.259 | 0.669 | -- | -- | -0.361 | 13.7 | 1.5 | 7265 | -- | -- |
| 40.85 | 0.298 | 8.31 | -0.357 | -- | 0.968 | -- | 0.171 | -0.361 | -- | 1.18 | 8988 | -- | -- |
| 47.64 | 0.324 | 8.28 | -0.193 | 0.274 | -- | 0.237 | -- | -0.196 | 13.6 | -- | -- | -- | -- |
| 47.87 | 0.324 | 8.27 | -0.185 | 0.273 | -- | -- | -- | -0.195 | 13.5 | -- | -- | -- | -- |
| 40.86 | 0.298 | 8.31 | -0.362 | -- | 0.955 | -- | -- | -0.38 | -- | 1.178 | 8988 | -- | -- |
| 42.29 | 0.303 | 8.31 | -- | 0.26 | 0.596 | -- | -- | -0.333 | 13.9 | 1.587 | 7281 | -- | -- |
| 52.45 | 0.338 | 8.28 | -0.196 | -- | -- | -- | -- | -0.2 | -- | -- | -- | -- | -- |
| 48.77 | 0.327 | 8.27 | -- | 0.277 | -- | -- | -- | -0.174 | 13.5 | -- | -- | -- | -- |
| 43.38 | 0.307 | 8.31 | -- | -- | 0.794 | -- | -- | -0.354 | -- | 1.57 | 6066 | -- | -- |
| 53.46 | 0.341 | 8.27 | -- | -- | -- | -- | -- | -0.179 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.59 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 4 | 39.76 | humidity | 80 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 5 | 39.76 | temperature | 20 | 30 | > th | dose dependent | rect. | 8 | 18 |
| 10 | 39.84 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 12 | 39.87 | humidity | 80 | 14400 | < th | dose independent | rect. | 14 | 5 |
| 14 | 39.87 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 15 | 39.88 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 16 |
| 19 | 39.89 | humidity | 70 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 24 | 39.91 | radiation | 40 | 4320 | < th | dose dependent | rect. | 18 | 3 |
| 40 | 39.97 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 68 | 40.09 | humidity | 80 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 77 | 40.14 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 87 | 40.14 | radiation | 1 | 14400 | < th | dose independent | rect. | 16 | 14 |
| 92 | 40.15 | radiation | 1 | 14400 | > th | dose independent | rect. | 16 | 14 |
| 110 | 40.19 | radiation | 1 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 111 | 40.19 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 119 | 40.19 | radiation | 1 | 14400 | < th | dose independent | rect. | 16 | 16 |
| 123 | 40.20 | radiation | 1 | 14400 | < th | dose independent | sin | 12 | NA |
| 146 | 40.21 | humidity | 80 | 14400 | > th | dose dependent | rect. | 12 | 15 |
| 149 | 40.22 | radiation | 1 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 165 | 40.23 | radiation | 1 | 14400 | > th | dose independent | sin | 12 | NA |
| 170 | 40.23 | humidity | 80 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 178 | 40.23 | radiation | 1 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 191 | 40.25 | humidity | 80 | 14400 | > th | dose independent | sin | 21 | NA |
| 249 | 40.28 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 306 | 40.31 | temperature | 25 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 313 | 40.32 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 23 |
| 339 | 40.34 | humidity | 80 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 377 | 40.35 | humidity | 80 | 14400 | > th | dose dependent | sin | 16 | NA |
| 400 | 40.36 | radiation | 1 | 14400 | > th | dose independent | rect. | 7 | 23 |
| 432 | 40.38 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 15 |
| 460 | 40.38 | radiation | 1 | 14400 | < th | dose independent | rect. | 23 | 21 |
| 483 | 40.39 | radiation | 1 | 14400 | < th | dose independent | no | NA | NA |
| 522 | 40.40 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 12 |
| 535 | 40.40 | radiation | 1 | 14400 | > th | dose independent | rect. | 9 | 21 |
| 546 | 40.41 | humidity | 80 | 14400 | < th | dose independent | sin | 21 | NA |
| 586 | 40.43 | radiation | 1 | 14400 | > th | dose independent | no | NA | NA |
| 591 | 40.43 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 14 |
| 656 | 40.44 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 701 | 40.46 | humidity | 80 | 14400 | > th | dose dependent | rect. | 23 | 22 |
| 715 | 40.47 | radiation | 1 | 14400 | > th | dose independent | rect. | 7 | 12 |
| 801 | 40.49 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 5 |
| 811 | 40.50 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 823 | 40.50 | humidity | 90 | 14400 | > th | dose independent | rect. | 13 | 15 |
| 834 | 40.50 | humidity | 80 | 14400 | > th | dose dependent | no | NA | NA |
| 845 | 40.50 | humidity | 80 | 14400 | > th | dose dependent | rect. | 17 | 23 |
| 897 | 40.52 | wind | 9 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 905 | 40.52 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 918 | 40.53 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 932 | 40.54 | humidity | 80 | 14400 | > th | dose independent | rect. | 10 | 1 |