Os06g0679700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0679700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.16 | 0.221 | 9.81 | 0.574 | 0.784 | 0.843 | -0.0369 | -1.45 | 0.235 | 13.9 | 28.89 | 652 | -- | -- |
| 24.38 | 0.23 | 9.84 | 0.301 | 0.731 | 0.857 | -0.149 | -- | 0.178 | 13.6 | 27.79 | 775 | -- | -- |
| 22.17 | 0.219 | 9.81 | 0.574 | 0.786 | 0.84 | -- | -1.45 | 0.236 | 13.9 | 28.72 | 646 | -- | -- |
| 24.4 | 0.23 | 9.84 | 0.297 | 0.772 | 0.864 | -- | -- | 0.172 | 13.8 | 27.46 | 654 | -- | -- |
| 50.76 | 0.332 | 9.81 | 0.709 | -- | 1.26 | -- | -1.66 | 0.26 | -- | 35.3 | 976 | -- | -- |
| 35.05 | 0.278 | 9.88 | 0.0636 | 0.832 | -- | -0.232 | -- | -0.0158 | 12.9 | -- | -- | -- | -- |
| 35.28 | 0.278 | 9.88 | 0.0552 | 0.832 | -- | -- | -- | -0.0169 | 12.9 | -- | -- | -- | -- |
| 52.6 | 0.338 | 9.83 | 0.394 | -- | 1.27 | -- | -- | 0.239 | -- | 28.89 | 946 | -- | -- |
| 26.45 | 0.24 | 9.86 | -- | 0.77 | 0.749 | -- | -- | 0.117 | 13.6 | 26.96 | 653 | -- | -- |
| 78.41 | 0.414 | 9.89 | 0.0242 | -- | -- | -- | -- | -0.0328 | -- | -- | -- | -- | -- |
| 35.36 | 0.278 | 9.88 | -- | 0.831 | -- | -- | -- | -0.0231 | 12.9 | -- | -- | -- | -- |
| 56.18 | 0.349 | 9.85 | -- | -- | 1.1 | -- | -- | 0.163 | -- | 29.05 | 940 | -- | -- |
| 78.43 | 0.413 | 9.9 | -- | -- | -- | -- | -- | -0.0355 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.95 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 20 |
| 2 | 20.96 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 19 |
| 6 | 21.05 | temperature | 15 | 270 | > th | dose dependent | rect. | 24 | 22 |
| 136 | 21.83 | temperature | 30 | 720 | < th | dose dependent | sin | 11 | NA |
| 230 | 22.19 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 240 | 22.21 | temperature | 25 | 270 | < th | dose dependent | sin | 6 | NA |
| 243 | 22.21 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 253 | 22.24 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 262 | 22.29 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 269 | 22.30 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 277 | 22.31 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 326 | 22.43 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 329 | 22.43 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 330 | 22.44 | temperature | 15 | 720 | > th | dose dependent | sin | 11 | NA |
| 331 | 22.44 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 337 | 22.45 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 368 | 22.51 | temperature | 25 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 373 | 22.52 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 394 | 22.55 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 423 | 22.60 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 20 |
| 429 | 22.62 | temperature | 30 | 10 | < th | dose dependent | rect. | 20 | 20 |
| 473 | 22.68 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 483 | 22.69 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 485 | 22.70 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 502 | 22.73 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 6 |
| 509 | 22.73 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 528 | 22.77 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 6 |
| 540 | 22.79 | wind | 5 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 573 | 22.84 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 11 |
| 600 | 22.87 | temperature | 30 | 10 | < th | dose dependent | rect. | 18 | 23 |
| 601 | 22.88 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 2 |
| 631 | 22.91 | wind | 5 | 43200 | > th | dose independent | rect. | 16 | 6 |
| 646 | 22.92 | temperature | 30 | 10 | < th | dose dependent | rect. | 20 | 17 |
| 650 | 22.93 | temperature | 20 | 1440 | > th | dose dependent | sin | 19 | NA |
| 659 | 22.94 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 686 | 22.97 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 10 |
| 727 | 23.01 | wind | 5 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 734 | 23.01 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 18 |
| 741 | 23.02 | wind | 5 | 43200 | < th | dose independent | rect. | 16 | 6 |
| 742 | 23.02 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 777 | 23.04 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 14 |
| 782 | 23.04 | temperature | 20 | 1440 | > th | dose dependent | rect. | 10 | 19 |
| 783 | 23.04 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 806 | 23.06 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 10 |
| 858 | 23.09 | temperature | 10 | 1440 | > th | dose dependent | sin | 0 | NA |
| 913 | 23.11 | temperature | 25 | 270 | < th | dose dependent | rect. | 3 | 10 |