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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0679500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Avr9 elicitor response-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.16 (0.0408) R2 : 0.181
β1 : -1.38 (0.149) R2dD : 0.159 R2D : 0.104
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.493 (0.0871) R2dN8 : 0.0771 R2N8 : 0.0227
σ : 0.766
deviance : 268.74
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
236.94 0.723 4.18 -1.44 0.583 -0.713 -0.445 2.14 -0.654 0.52 90 91 -- --
244.46 0.728 4.19 -1.3 0.634 -0.649 0.378 -- -0.622 1.07 88.98 78 -- --
237.56 0.718 4.19 -1.41 0.588 -0.729 -- 1.85 -0.659 0.73 89.93 91 -- --
245.15 0.729 4.2 -1.32 0.633 -0.631 -- -- -0.623 0.805 89 78 -- --
256.33 0.746 4.16 -1.42 -- -0.437 -- 2 -0.588 -- 90.17 98 -- --
255.41 0.749 4.17 -1.4 0.46 -- -0.22 -- -0.497 22.7 -- -- -- --
255.58 0.749 4.17 -1.39 0.46 -- -- -- -0.496 22.9 -- -- -- --
251.27 0.738 4.2 -1.31 -- -0.909 -- -- -0.591 -- 77 850 -- --
290.46 0.794 4.17 -- 0.675 -0.754 -- -- -0.503 0.9 88.41 60 -- --
268.74 0.766 4.16 -1.38 -- -- -- -- -0.493 -- -- -- -- --
306.41 0.819 4.14 -- 0.449 -- -- -- -0.342 22.7 -- -- -- --
296.75 0.802 4.16 -- -- -0.908 -- -- -0.473 -- 83 780 -- --
318.88 0.834 4.13 -- -- -- -- -- -0.34 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 232.73 radiation 1 1440 > th dose independent rect. 9 2
3 233.97 radiation 1 1440 < th dose independent rect. 9 1
4 233.97 radiation 1 1440 < th dose dependent rect. 9 1
8 235.76 humidity 90 90 > th dose dependent rect. 5 22
14 236.36 humidity 90 90 > th dose dependent rect. 18 22
17 236.44 humidity 90 90 > th dose dependent rect. 18 18
19 236.45 radiation 1 720 < th dose independent rect. 8 22
27 236.58 radiation 1 720 > th dose independent rect. 6 13
42 236.70 radiation 1 720 < th dose independent rect. 7 15
48 236.81 radiation 1 720 < th dose dependent rect. 7 15
49 236.82 humidity 90 90 > th dose dependent rect. 10 22
56 236.94 humidity 90 90 > th dose dependent no NA NA
58 236.94 humidity 90 90 > th dose dependent rect. 13 23
59 236.94 humidity 90 90 > th dose dependent rect. 21 23
60 236.96 humidity 90 90 > th dose dependent rect. 15 23
62 236.97 humidity 90 90 > th dose dependent rect. 23 23
66 237.00 humidity 90 90 > th dose dependent rect. 3 23
71 237.02 radiation 1 720 < th dose dependent rect. 7 21
76 237.12 humidity 90 90 > th dose dependent rect. 7 23
79 237.18 humidity 90 90 > th dose dependent rect. 21 19
80 237.19 radiation 10 1440 > th dose independent rect. 14 3
86 237.22 atmosphere 1015 4320 < th dose independent rect. 7 3
90 237.23 atmosphere 1015 4320 > th dose dependent rect. 9 1
92 237.24 atmosphere 1015 4320 > th dose independent rect. 7 3
99 237.27 humidity 90 90 > th dose dependent rect. 21 15
105 237.30 radiation 1 270 < th dose dependent rect. 18 23
106 237.31 atmosphere 1015 4320 < th dose independent rect. 9 1
117 237.38 humidity 50 270 > th dose dependent rect. 7 23
120 237.43 humidity 90 90 > th dose dependent rect. 1 23
125 237.54 atmosphere 1015 4320 > th dose dependent rect. 7 3
126 237.55 atmosphere 1015 4320 > th dose dependent rect. 7 1
133 237.61 radiation 1 720 > th dose independent sin 23 NA
138 237.66 radiation 10 1440 < th dose dependent rect. 15 3
139 237.66 humidity 90 270 > th dose dependent rect. 7 20
143 237.68 radiation 1 720 < th dose dependent rect. 7 23
151 237.73 radiation 1 720 < th dose independent rect. 5 16
154 237.76 radiation 10 1440 > th dose independent sin 16 NA
155 237.76 radiation 1 720 < th dose independent rect. 5 23
158 237.78 radiation 10 1440 > th dose independent rect. 13 18
191 237.94 humidity 60 90 > th dose dependent rect. 10 22
202 237.95 humidity 80 10 > th dose dependent rect. 11 21
220 237.99 humidity 90 90 > th dose dependent rect. 23 16
232 238.06 radiation 1 720 < th dose independent rect. 3 18
234 238.06 humidity 90 90 > th dose dependent rect. 23 13
242 238.12 radiation 1 720 > th dose independent rect. 17 23
246 238.14 humidity 70 90 > th dose dependent rect. 10 20
251 238.16 temperature 15 720 < th dose independent rect. 14 13
254 238.17 temperature 15 720 < th dose independent rect. 17 10
272 238.25 humidity 80 10 > th dose dependent rect. 19 22
274 238.26 temperature 15 720 < th dose dependent rect. 20 8
277 238.27 temperature 15 720 > th dose independent rect. 6 8
278 238.27 radiation 1 720 < th dose independent rect. 23 23
280 238.28 temperature 15 720 < th dose dependent rect. 11 17
282 238.29 temperature 15 720 < th dose independent sin 17 NA
285 238.29 temperature 15 720 < th dose dependent rect. 22 5
286 238.29 radiation 10 1440 < th dose dependent rect. 15 5
287 238.29 radiation 10 1440 < th dose dependent rect. 15 7
289 238.29 radiation 10 1440 < th dose dependent rect. 15 12
292 238.30 temperature 15 720 < th dose dependent sin 13 NA
313 238.31 radiation 10 1440 < th dose dependent rect. 15 10
329 238.35 radiation 1 720 < th dose independent rect. 3 23
336 238.36 humidity 80 1440 > th dose dependent rect. 11 2
339 238.37 temperature 15 720 < th dose dependent sin 18 NA
350 238.39 humidity 90 90 > th dose independent rect. 18 21
368 238.44 humidity 90 720 > th dose dependent rect. 8 14
381 238.48 temperature 15 720 > th dose independent sin 9 NA
396 238.48 radiation 1 720 < th dose dependent rect. 3 18
419 238.51 humidity 90 10 < th dose independent rect. 6 16
431 238.53 humidity 90 90 > th dose independent rect. 23 22
454 238.57 temperature 15 720 < th dose dependent rect. 23 3
456 238.58 temperature 15 720 < th dose independent rect. 22 4
457 238.58 humidity 90 90 > th dose independent rect. 18 18
468 238.59 humidity 50 90 > th dose dependent rect. 10 7
536 238.66 humidity 80 10 > th dose dependent rect. 3 23
542 238.68 humidity 90 90 > th dose independent rect. 10 22
547 238.68 radiation 1 720 < th dose dependent rect. 23 23
557 238.71 radiation 1 720 < th dose independent sin 2 NA
572 238.72 radiation 1 720 > th dose independent rect. 11 23
591 238.76 radiation 1 720 < th dose dependent rect. 3 23
599 238.78 radiation 1 1440 > th dose dependent rect. 15 2
603 238.80 radiation 1 720 < th dose independent no NA NA
610 238.81 radiation 1 720 > th dose independent no NA NA
682 238.84 radiation 1 720 < th dose independent rect. 12 23
698 238.88 radiation 1 720 < th dose independent rect. 1 15
729 238.92 radiation 1 720 > th dose independent rect. 15 23
770 238.98 radiation 1 720 < th dose dependent sin 23 NA
772 238.99 radiation 1 720 < th dose independent sin 23 NA
810 239.05 humidity 90 10 < th dose independent sin 23 NA
851 239.10 radiation 1 720 < th dose independent rect. 14 23
852 239.10 humidity 90 30 > th dose dependent sin 22 NA
861 239.13 humidity 90 90 > th dose independent rect. 23 16
887 239.17 humidity 90 90 > th dose independent no NA NA
888 239.17 humidity 90 90 > th dose independent rect. 13 23
889 239.17 radiation 1 720 < th dose dependent rect. 1 16
894 239.18 humidity 90 90 > th dose independent rect. 7 23
923 239.20 radiation 1 720 < th dose dependent no NA NA
938 239.23 humidity 90 90 > th dose independent rect. 5 23
941 239.23 radiation 10 1440 < th dose dependent rect. 9 9
942 239.23 radiation 1 720 < th dose dependent rect. 12 23
953 239.27 humidity 90 90 > th dose independent rect. 21 18
995 239.35 humidity 90 90 > th dose independent rect. 23 13
997 239.35 humidity 90 10 < th dose independent rect. 4 18
998 239.35 humidity 90 90 > th dose dependent sin 3 NA
1000 239.36 radiation 1 270 < th dose independent rect. 18 23