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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0679400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Myb-related protein Pp2.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.12 (0.0387) R2 : 0.107
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.23 (0.572) R2dE : 0.107 R2E : 0.107
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00274 (0.0815) R2dN8 : 2.77e-06 R2N8 : 3.65e-05
σ : 0.727
deviance : 243.63
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 3.197
memory length : 4
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 4.69
open length of G : 2.36

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
237.16 0.724 3.12 -0.0297 0.337 4.07 -0.49 0.751 -0.0153 6.6 3.195 4 4.38 1.62
237.2 0.717 3.12 -0.0301 0.338 4.04 -0.477 -- -0.015 6.6 3.204 4 4.53 1.82
237.75 0.718 3.12 -0.0379 0.337 4.06 -- 0.484 -0.0141 6.43 3.209 4 4.86 2.07
237.76 0.718 3.12 -0.038 0.337 4.05 -- -- -0.0138 6.43 3.219 4 4.6 2.01
243.58 0.727 3.12 -0.0288 -- 4.24 -- 0.566 -0.006 -- 3.198 4 4.86 2.3
263.63 0.761 3.12 -0.043 0.406 -- -0.496 -- -0.0384 6.46 -- -- -- --
264.23 0.761 3.12 -0.0502 0.404 -- -- -- -0.037 6.34 -- -- -- --
243.6 0.727 3.12 -0.0289 -- 4.22 -- -- -0.00587 -- 3.201 4 4.58 2.15
237.8 0.718 3.12 -- 0.336 4.05 -- -- -0.00982 6.44 3.221 4 4.72 2.23
272.71 0.772 3.13 -0.0395 -- -- -- -- -0.0283 -- -- -- -- --
264.3 0.76 3.12 -- 0.403 -- -- -- -0.0314 6.34 -- -- -- --
243.63 0.727 3.12 -- -- 4.23 -- -- -0.00274 -- 3.197 4 4.69 2.36
272.75 0.771 3.13 -- -- -- -- -- -0.024 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 239.22 wind 3.0 10 > th dose dependent rect. 6 1
6 241.70 wind 3.0 10 > th dose independent rect. 5 2
14 243.26 wind 3.0 90 > th dose independent rect. 5 1
21 245.85 atmosphere 1000.0 10 < th dose independent rect. 3 1
28 245.85 atmosphere 1000.0 10 < th dose dependent rect. 3 1
43 246.02 wind 1.0 90 < th dose independent rect. 2 1
52 248.04 humidity 80.0 90 < th dose dependent rect. 4 3
53 248.18 precipitation 0.1 30 > th dose independent rect. 4 10
57 248.20 precipitation 0.1 30 > th dose dependent rect. 4 10
61 248.21 precipitation 0.1 90 > th dose dependent rect. 4 3
62 248.25 precipitation 0.1 90 > th dose independent rect. 4 3
63 248.26 precipitation 0.1 10 > th dose independent rect. 4 4
140 248.39 humidity 80.0 90 < th dose independent rect. 2 5
142 248.41 humidity 80.0 90 < th dose independent rect. 4 3
214 250.74 wind 3.0 10 > th dose independent rect. 2 5
215 250.84 radiation 1.0 10 < th dose independent rect. 6 1
218 250.95 humidity 90.0 90 < th dose dependent rect. 2 5
226 251.28 humidity 80.0 720 > th dose dependent rect. 12 1
228 251.32 wind 1.0 90 < th dose dependent rect. 2 1
253 252.06 humidity 80.0 720 > th dose independent rect. 12 1
255 252.41 radiation 10.0 10 < th dose dependent rect. 9 3
272 253.07 precipitation 0.1 10 > th dose dependent sin 1 NA
274 253.09 precipitation 0.1 10 > th dose independent sin 1 NA
284 253.32 atmosphere 1005.0 30 > th dose dependent rect. 2 2
291 253.58 wind 1.0 10 < th dose independent rect. 2 2
293 253.60 radiation 10.0 10 < th dose independent rect. 9 3
354 253.81 humidity 90.0 270 < th dose dependent rect. 2 1
356 253.87 radiation 10.0 30 < th dose independent rect. 9 1
384 254.16 precipitation 0.1 10 > th dose independent rect. 5 18
386 254.16 precipitation 0.1 10 > th dose dependent rect. 5 18
399 254.24 wind 3.0 10 > th dose dependent rect. 2 5
406 254.42 precipitation 0.1 10 < th dose independent sin 1 NA
408 254.42 precipitation 0.1 10 < th dose dependent sin 1 NA
425 254.67 wind 9.0 30 < th dose independent rect. 3 23
426 254.68 radiation 10.0 10 < th dose dependent rect. 9 1
438 254.78 temperature 20.0 30 > th dose independent rect. 2 1
439 254.78 temperature 15.0 30 > th dose independent rect. 3 23
446 254.83 temperature 25.0 30 < th dose independent rect. 2 1
447 254.83 humidity 90.0 30 > th dose independent rect. 2 1
451 254.84 atmosphere 1005.0 30 > th dose dependent rect. 2 6
452 254.85 atmosphere 1000.0 30 > th dose independent rect. 2 1
454 254.87 temperature 15.0 30 > th dose dependent rect. 2 1
456 254.87 atmosphere 995.0 30 > th dose dependent rect. 2 1
462 254.89 humidity 70.0 30 > th dose dependent rect. 2 1
464 254.90 wind 5.0 30 < th dose independent rect. 2 1
467 254.90 humidity 50.0 30 > th dose dependent rect. 2 1
470 254.91 temperature 10.0 30 > th dose independent rect. 2 1
473 254.91 humidity 50.0 30 > th dose independent rect. 2 1
477 254.91 atmosphere 1010.0 30 < th dose independent rect. 2 1
479 254.91 radiation 1.0 30 < th dose independent rect. 2 1
484 254.91 precipitation 0.1 30 < th dose independent rect. 2 1
486 254.91 wind 7.0 30 < th dose dependent rect. 2 1
488 254.91 radiation 1.0 30 < th dose dependent rect. 2 1
493 254.91 precipitation 0.1 30 < th dose dependent rect. 2 1
510 255.02 temperature 30.0 30 < th dose dependent rect. 2 1
513 255.05 atmosphere 1015.0 30 < th dose dependent rect. 2 1
516 255.10 humidity 70.0 4320 > th dose dependent rect. 3 1
541 255.34 atmosphere 1005.0 10 > th dose dependent rect. 24 8
543 255.37 wind 1.0 30 > th dose independent rect. 2 1
549 255.42 precipitation 0.1 90 > th dose independent rect. 2 5
556 255.44 precipitation 0.1 90 > th dose dependent rect. 2 5
579 255.61 humidity 80.0 270 < th dose independent rect. 2 1
595 255.66 humidity 70.0 4320 > th dose dependent rect. 3 3
652 255.89 precipitation 0.1 90 > th dose independent rect. 23 8
660 255.92 precipitation 0.1 90 > th dose dependent rect. 23 8
676 255.96 precipitation 0.1 10 < th dose independent rect. 3 23
678 255.96 precipitation 0.1 10 < th dose dependent rect. 3 23
698 256.03 wind 3.0 270 > th dose dependent rect. 2 3
773 256.49 radiation 30.0 90 > th dose dependent rect. 7 1
789 256.49 wind 9.0 30 < th dose dependent rect. 3 23
796 256.52 radiation 30.0 10 > th dose dependent rect. 7 1
833 256.54 radiation 30.0 30 > th dose independent rect. 7 1
993 256.74 humidity 90.0 4320 > th dose independent rect. 1 5