Os06g0679200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os06g0679200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 100.57 | 0.471 | 3.01 | 0.0633 | 0.139 | 1.8 | -0.159 | 3.6 | 0.134 | 7.87 | 18.42 | 1093 | -- | -- |
| 104.09 | 0.475 | 2.97 | 0.163 | 0.153 | 0.407 | -0.0564 | -- | 0.157 | 8.25 | 21.64 | 1735 | -- | -- |
| 99.68 | 0.465 | 3.03 | 0.105 | 0.14 | 3.62 | -- | 7.45 | 0.133 | 8.99 | 17.1 | 1167 | -- | -- |
| 103.22 | 0.473 | 2.95 | 0.376 | 0.158 | 0.546 | -- | -- | 0.252 | 7.35 | 24.09 | 7369 | -- | -- |
| 100.79 | 0.468 | 3.04 | 0.0997 | -- | 3.73 | -- | 7.67 | 0.129 | -- | 17.08 | 1150 | -- | -- |
| 105.53 | 0.482 | 2.98 | 0.0448 | 0.154 | -- | 0.0725 | -- | 0.116 | 9.59 | -- | -- | -- | -- |
| 105.54 | 0.481 | 2.98 | 0.0471 | 0.155 | -- | -- | -- | 0.116 | 9.35 | -- | -- | -- | -- |
| 102.33 | 0.471 | 2.94 | 0.563 | -- | 0.604 | -- | -- | 0.318 | -- | 23.75 | 19526 | -- | -- |
| 103.96 | 0.475 | 2.97 | -- | 0.151 | 0.254 | -- | -- | 0.174 | 8.97 | 42.69 | 9880 | -- | -- |
| 106.95 | 0.483 | 2.99 | 0.0463 | -- | -- | -- | -- | 0.117 | -- | -- | -- | -- | -- |
| 105.6 | 0.481 | 2.98 | -- | 0.155 | -- | -- | -- | 0.111 | 9.33 | -- | -- | -- | -- |
| 105.14 | 0.478 | 2.98 | -- | -- | 0.289 | -- | -- | 0.157 | -- | 47.6 | 2180 | -- | -- |
| 107 | 0.483 | 2.99 | -- | -- | -- | -- | -- | 0.112 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 91.93 | temperature | 25.0 | 10 | > th | dose independent | rect. | 7 | 1 |
| 3 | 94.17 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 6 | 94.17 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 9 | 94.17 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 10 | 94.17 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 23 |
| 13 | 94.64 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 8 | 1 |
| 14 | 94.73 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 8 | 1 |
| 16 | 94.82 | humidity | 80.0 | 30 | < th | dose independent | rect. | 8 | 1 |
| 19 | 94.88 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 8 | 1 |
| 22 | 94.96 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 8 | 1 |
| 26 | 95.01 | wind | 1.0 | 30 | > th | dose independent | rect. | 8 | 1 |
| 27 | 95.01 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 8 | 1 |
| 28 | 95.05 | radiation | 10.0 | 30 | > th | dose independent | rect. | 8 | 1 |
| 29 | 95.05 | wind | 7.0 | 30 | < th | dose dependent | rect. | 8 | 1 |
| 30 | 95.06 | wind | 5.0 | 30 | < th | dose independent | rect. | 8 | 1 |
| 37 | 95.10 | temperature | 10.0 | 30 | > th | dose independent | rect. | 8 | 1 |
| 39 | 95.10 | temperature | 30.0 | 30 | < th | dose independent | rect. | 8 | 1 |
| 40 | 95.10 | humidity | 50.0 | 30 | > th | dose independent | rect. | 8 | 1 |
| 43 | 95.10 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 8 | 1 |
| 46 | 95.10 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 8 | 1 |
| 47 | 95.10 | temperature | 10.0 | 30 | > th | dose independent | rect. | 9 | 23 |
| 48 | 95.10 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 8 | 1 |
| 50 | 95.11 | radiation | 30.0 | 30 | < th | dose independent | rect. | 8 | 1 |
| 55 | 95.39 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 8 | 1 |
| 56 | 95.43 | wind | 1.0 | 30 | > th | dose dependent | rect. | 8 | 1 |
| 57 | 95.43 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 8 | 1 |
| 67 | 96.02 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 8 | 1 |
| 70 | 96.21 | humidity | 80.0 | 10 | < th | dose independent | rect. | 1 | 8 |
| 92 | 96.90 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 8 | 1 |
| 96 | 97.16 | wind | 9.0 | 30 | < th | dose independent | rect. | 9 | 23 |
| 122 | 97.52 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 4 | 6 |
| 153 | 97.96 | wind | 9.0 | 14400 | > th | dose independent | rect. | 1 | 9 |
| 155 | 97.99 | wind | 9.0 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 161 | 98.07 | wind | 7.0 | 4320 | < th | dose independent | rect. | 3 | 8 |
| 162 | 98.08 | wind | 9.0 | 14400 | > th | dose independent | rect. | 4 | 6 |
| 168 | 98.10 | wind | 9.0 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 182 | 98.21 | wind | 7.0 | 14400 | < th | dose independent | rect. | 4 | 5 |
| 231 | 98.42 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 239 | 98.46 | wind | 7.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 305 | 98.64 | wind | 7.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 307 | 98.65 | wind | 7.0 | 4320 | < th | dose independent | sin | 8 | NA |
| 318 | 98.66 | wind | 7.0 | 4320 | > th | dose dependent | sin | 8 | NA |
| 335 | 98.70 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 24 | 9 |
| 336 | 98.71 | wind | 7.0 | 4320 | > th | dose independent | sin | 8 | NA |
| 344 | 98.73 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 430 | 98.92 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 435 | 98.93 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 527 | 99.10 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 695 | 99.33 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 697 | 99.33 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 22 |
| 736 | 99.39 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 894 | 99.58 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 10 | 2 |