Os06g0678700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os06g0678700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.75 | 0.344 | 3.6 | 0.517 | 0.177 | 0.682 | 0.214 | 1.09 | 0.268 | 15.7 | 21.4 | 1387 | -- | -- |
| 56.46 | 0.35 | 3.64 | 0.25 | 0.125 | 0.577 | 0.142 | -- | 0.205 | 16.1 | 21.8 | 1803 | -- | -- |
| 53.88 | 0.342 | 3.6 | 0.52 | 0.178 | 0.682 | -- | 1.08 | 0.27 | 15.9 | 21.4 | 1397 | -- | -- |
| 55.94 | 0.348 | 3.65 | 0.243 | 0.207 | 0.562 | -- | -- | 0.208 | 15.6 | 21.79 | 1175 | -- | -- |
| 55.34 | 0.346 | 3.6 | 0.511 | -- | 0.677 | -- | 1.1 | 0.265 | -- | 21.5 | 1598 | -- | -- |
| 66.95 | 0.384 | 3.6 | 0.484 | 0.153 | -- | 0.209 | -- | 0.378 | 15.8 | -- | -- | -- | -- |
| 67.07 | 0.384 | 3.6 | 0.487 | 0.156 | -- | -- | -- | 0.379 | 16.2 | -- | -- | -- | -- |
| 57.8 | 0.354 | 3.63 | 0.285 | -- | 0.499 | -- | -- | 0.214 | -- | 22.2 | 1873 | -- | -- |
| 57.41 | 0.353 | 3.65 | -- | 0.2 | 0.652 | -- | -- | 0.154 | 15.4 | 21.71 | 1211 | -- | -- |
| 68.39 | 0.386 | 3.6 | 0.481 | -- | -- | -- | -- | 0.375 | -- | -- | -- | -- | -- |
| 73.32 | 0.401 | 3.61 | -- | 0.147 | -- | -- | -- | 0.325 | 16.2 | -- | -- | -- | -- |
| 58.82 | 0.357 | 3.65 | -- | -- | 0.651 | -- | -- | 0.152 | -- | 21.73 | 1803 | -- | -- |
| 74.49 | 0.403 | 3.61 | -- | -- | -- | -- | -- | 0.322 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.57 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 21 |
| 10 | 54.80 | temperature | 25 | 1440 | < th | dose dependent | rect. | 11 | 15 |
| 11 | 54.81 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 13 |
| 14 | 54.84 | temperature | 25 | 1440 | < th | dose dependent | sin | 17 | NA |
| 20 | 54.86 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 8 |
| 25 | 54.86 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 22 |
| 36 | 54.90 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 40 | 54.91 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 52 | 54.94 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 57 | 54.94 | temperature | 25 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 85 | 55.00 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 86 | 55.01 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 100 | 55.02 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 204 | 55.31 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 274 | 55.52 | temperature | 25 | 720 | < th | dose dependent | sin | 10 | NA |
| 397 | 55.80 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 5 |
| 434 | 55.87 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 461 | 55.96 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 488 | 56.03 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 3 |
| 490 | 56.03 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 13 |
| 544 | 56.12 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 604 | 56.22 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 657 | 56.29 | temperature | 25 | 720 | < th | dose dependent | sin | 1 | NA |
| 680 | 56.32 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 19 |
| 752 | 56.41 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 19 |
| 804 | 56.46 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 841 | 56.51 | temperature | 20 | 4320 | > th | dose independent | sin | 17 | NA |
| 869 | 56.55 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 12 |
| 876 | 56.56 | temperature | 20 | 4320 | < th | dose independent | sin | 17 | NA |
| 897 | 56.57 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 923 | 56.59 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 924 | 56.59 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 925 | 56.60 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 926 | 56.60 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 3 |
| 927 | 56.60 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 3 |
| 941 | 56.61 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 975 | 56.64 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 12 |
| 976 | 56.64 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 15 |
| 988 | 56.65 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |