Os06g0678500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0678500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 204.61 | 0.672 | 10.4 | 2.31 | 0.844 | -0.939 | -0.312 | 0.25 | 0.855 | 20.6 | 20.5 | 80 | -- | -- |
| 204.93 | 0.667 | 10.4 | 2.26 | 0.838 | -0.95 | -0.355 | -- | 0.855 | 20.6 | 20.51 | 73 | -- | -- |
| 204.87 | 0.667 | 10.4 | 2.32 | 0.842 | -0.932 | -- | 0.293 | 0.855 | 20.7 | 20.53 | 73 | -- | -- |
| 205.32 | 0.667 | 10.4 | 2.28 | 0.834 | -0.949 | -- | -- | 0.85 | 20.7 | 20.5 | 73 | -- | -- |
| 244.09 | 0.732 | 10.3 | 2.31 | -- | -1.02 | -- | 0.253 | 0.862 | -- | 20.53 | 73 | -- | -- |
| 242.09 | 0.729 | 10.4 | 2 | 0.94 | -- | -0.27 | -- | 0.658 | 21.5 | -- | -- | -- | -- |
| 242.35 | 0.729 | 10.4 | 2.01 | 0.94 | -- | -- | -- | 0.658 | 21.6 | -- | -- | -- | -- |
| 244.44 | 0.728 | 10.3 | 2.3 | -- | -1.06 | -- | -- | 0.864 | -- | 20.5 | 47 | -- | -- |
| 333.74 | 0.855 | 10.4 | -- | 0.859 | -0.574 | -- | -- | 0.53 | 21.3 | 20.5 | 73 | -- | -- |
| 294.54 | 0.802 | 10.4 | 2.01 | -- | -- | -- | -- | 0.656 | -- | -- | -- | -- | -- |
| 348.61 | 0.873 | 10.5 | -- | 0.944 | -- | -- | -- | 0.435 | 21.7 | -- | -- | -- | -- |
| 375.5 | 0.905 | 10.4 | -- | -- | -0.733 | -- | -- | 0.552 | -- | 20.6 | 34 | -- | -- |
| 401.63 | 0.935 | 10.4 | -- | -- | -- | -- | -- | 0.432 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 196.62 | wind | 7.0 | 4320 | > th | dose independent | rect. | 17 | 5 |
| 2 | 197.02 | wind | 7.0 | 4320 | > th | dose independent | rect. | 17 | 8 |
| 8 | 198.49 | wind | 7.0 | 4320 | < th | dose independent | rect. | 17 | 5 |
| 9 | 198.59 | wind | 7.0 | 4320 | < th | dose independent | rect. | 17 | 8 |
| 10 | 198.71 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 11 | 198.71 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 13 | 198.80 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 17 | 5 |
| 19 | 199.44 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 17 | 8 |
| 32 | 201.94 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 33 | 201.94 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 14 | 1 |
| 34 | 202.21 | wind | 5.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 36 | 202.41 | wind | 5.0 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 56 | 203.35 | wind | 1.0 | 270 | < th | dose dependent | rect. | 24 | 1 |
| 67 | 203.63 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 79 | 203.78 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 89 | 204.03 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 95 | 204.10 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 134 | 205.05 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 140 | 205.38 | wind | 7.0 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 152 | 205.91 | temperature | 20.0 | 90 | > th | dose independent | rect. | 7 | 23 |
| 178 | 206.41 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 10 | 5 |
| 179 | 206.41 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 10 | 5 |
| 186 | 206.58 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 195 | 206.98 | temperature | 20.0 | 10 | > th | dose independent | rect. | 7 | 23 |
| 215 | 207.28 | wind | 7.0 | 4320 | > th | dose dependent | sin | 13 | NA |
| 248 | 207.87 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 253 | 207.93 | temperature | 20.0 | 90 | < th | dose independent | rect. | 11 | 22 |
| 255 | 207.95 | wind | 7.0 | 4320 | > th | dose independent | sin | 13 | NA |
| 258 | 207.96 | temperature | 20.0 | 90 | < th | dose independent | rect. | 23 | 23 |
| 261 | 208.00 | temperature | 20.0 | 90 | > th | dose independent | no | NA | NA |
| 284 | 208.22 | temperature | 20.0 | 10 | < th | dose independent | rect. | 12 | 21 |
| 286 | 208.23 | wind | 5.0 | 720 | > th | dose independent | rect. | 21 | 2 |
| 296 | 208.32 | temperature | 20.0 | 10 | > th | dose independent | no | NA | NA |
| 299 | 208.34 | temperature | 20.0 | 10 | < th | dose independent | rect. | 1 | 23 |
| 304 | 208.38 | wind | 7.0 | 4320 | < th | dose independent | sin | 13 | NA |
| 333 | 208.65 | temperature | 20.0 | 270 | < th | dose independent | rect. | 10 | 19 |
| 345 | 208.74 | temperature | 20.0 | 10 | < th | dose independent | rect. | 15 | 23 |
| 346 | 208.75 | temperature | 20.0 | 10 | < th | dose independent | no | NA | NA |
| 348 | 208.78 | temperature | 20.0 | 90 | > th | dose independent | sin | 9 | NA |
| 350 | 208.78 | temperature | 20.0 | 10 | > th | dose independent | rect. | 1 | 23 |
| 356 | 208.81 | temperature | 20.0 | 10 | < th | dose independent | rect. | 17 | 23 |
| 357 | 208.81 | temperature | 20.0 | 10 | < th | dose independent | rect. | 19 | 23 |
| 366 | 208.88 | temperature | 20.0 | 10 | < th | dose independent | rect. | 7 | 23 |
| 375 | 208.93 | temperature | 20.0 | 10 | < th | dose independent | rect. | 5 | 23 |
| 378 | 208.94 | temperature | 20.0 | 10 | < th | dose independent | rect. | 23 | 23 |
| 385 | 208.97 | temperature | 20.0 | 10 | < th | dose independent | rect. | 3 | 23 |
| 394 | 209.02 | temperature | 20.0 | 10 | < th | dose independent | rect. | 21 | 23 |
| 395 | 209.03 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 419 | 209.20 | temperature | 20.0 | 90 | < th | dose independent | no | NA | NA |
| 432 | 209.28 | temperature | 20.0 | 90 | < th | dose independent | rect. | 21 | 23 |
| 439 | 209.33 | temperature | 20.0 | 90 | > th | dose independent | rect. | 21 | 23 |
| 468 | 209.52 | wind | 9.0 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 496 | 209.65 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 24 | 4 |
| 511 | 209.72 | temperature | 20.0 | 270 | < th | dose independent | rect. | 6 | 23 |
| 519 | 209.81 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 24 | 4 |
| 536 | 209.90 | temperature | 20.0 | 90 | > th | dose independent | rect. | 9 | 23 |
| 543 | 209.92 | temperature | 20.0 | 10 | > th | dose independent | rect. | 21 | 23 |
| 548 | 209.95 | temperature | 20.0 | 90 | > th | dose independent | rect. | 23 | 23 |
| 596 | 210.15 | temperature | 20.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 601 | 210.22 | temperature | 20.0 | 10 | > th | dose independent | sin | 10 | NA |
| 604 | 210.22 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 608 | 210.24 | temperature | 20.0 | 10 | > th | dose independent | rect. | 23 | 23 |
| 659 | 210.47 | temperature | 20.0 | 270 | > th | dose independent | rect. | 18 | 23 |
| 710 | 210.69 | wind | 1.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 738 | 210.84 | temperature | 20.0 | 10 | > th | dose independent | rect. | 12 | 18 |
| 749 | 210.88 | temperature | 20.0 | 270 | > th | dose independent | rect. | 14 | 23 |
| 795 | 211.11 | wind | 1.0 | 270 | < th | dose independent | rect. | 23 | 2 |
| 833 | 211.32 | wind | 3.0 | 720 | > th | dose dependent | rect. | 21 | 2 |
| 849 | 211.41 | atmosphere | 1005.0 | 14400 | < th | dose independent | sin | 12 | NA |
| 861 | 211.45 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 20 | 14 |