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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0676900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.95 (0.0138) R2 : 0.00666
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.051 (0.0291) R2dN8 : 0.0086 R2N8 : 0.00666
σ : 0.261
deviance : 31.18
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
21.91 0.218 2.66 -0.528 0.022 30.7 0.0644 67.9 -0.0247 11.8 15 90 -- --
26.95 0.244 2.95 -0.0093 0.0519 -1.47 -0.148 -- -0.0429 12.6 15 90 -- --
21.92 0.218 2.67 -0.523 0.0231 30.7 -- 68 -0.0255 12.5 15.02 87 -- --
21.93 0.218 2.94 0.0534 0.0256 -1.49 -- -- -0.024 12.6 15.3 88 -- --
21.95 0.218 2.66 -0.524 -- 30.8 -- 68 -0.0246 -- 15.02 89 -- --
31 0.261 2.95 -0.0726 0.0274 -- 0.0293 -- -0.0587 12.3 -- -- -- --
31 0.261 2.95 -0.0714 0.0274 -- -- -- -0.0585 12.6 -- -- -- --
21.96 0.218 2.94 0.0554 -- -1.45 -- -- -0.0235 -- 15.3 135 -- --
22.02 0.219 2.95 -- 0.0232 -1.46 -- -- -0.0317 12.5 15.29 88 -- --
31.05 0.26 2.95 -0.0723 -- -- -- -- -0.059 -- -- -- -- --
31.13 0.261 2.95 -- 0.0285 -- -- -- -0.0506 12.8 -- -- -- --
22.05 0.219 2.95 -- -- -1.43 -- -- -0.032 -- 15.26 131 -- --
31.18 0.261 2.95 -- -- -- -- -- -0.051 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 21.59 radiation 1.0 1440 > th dose independent rect. 8 5
2 21.62 atmosphere 1015.0 1440 < th dose independent rect. 24 10
4 21.65 temperature 15.0 1440 > th dose independent rect. 10 3
5 21.67 temperature 15.0 1440 > th dose independent rect. 8 5
6 21.67 temperature 15.0 1440 > th dose independent rect. 6 8
20 21.76 temperature 15.0 1440 > th dose independent rect. 5 1
21 21.77 radiation 1.0 1440 < th dose independent rect. 8 5
23 21.77 radiation 1.0 1440 < th dose dependent rect. 8 5
24 21.78 temperature 15.0 1440 > th dose independent rect. 5 3
25 21.78 temperature 15.0 1440 > th dose independent rect. 5 5
31 21.80 temperature 15.0 1440 > th dose independent rect. 6 22
38 21.84 temperature 15.0 1440 > th dose independent rect. 7 3
40 21.85 temperature 15.0 1440 > th dose independent rect. 10 1
45 21.87 atmosphere 1015.0 1440 < th dose independent rect. 1 1
53 21.88 temperature 15.0 720 < th dose independent rect. 6 18
59 21.89 temperature 15.0 720 < th dose independent rect. 9 15
62 21.89 temperature 15.0 720 < th dose dependent rect. 24 23
63 21.90 temperature 15.0 270 > th dose independent sin 7 NA
65 21.90 temperature 15.0 270 > th dose independent sin 17 NA
66 21.90 temperature 15.0 90 > th dose independent sin 2 NA
74 21.90 temperature 15.0 720 < th dose independent sin 23 NA
86 21.90 temperature 15.0 720 < th dose independent rect. 20 7
87 21.90 temperature 15.0 720 < th dose independent rect. 18 10
88 21.90 temperature 15.0 720 < th dose independent rect. 14 15
91 21.90 temperature 15.0 720 < th dose independent rect. 9 18
94 21.90 temperature 15.0 720 < th dose independent rect. 4 19
98 21.90 temperature 15.0 720 < th dose independent rect. 4 21
102 21.90 temperature 15.0 720 < th dose dependent sin 10 NA
103 21.90 temperature 15.0 720 < th dose dependent sin 0 NA
104 21.90 temperature 20.0 720 < th dose dependent rect. 11 3
105 21.90 temperature 15.0 720 < th dose dependent rect. 22 6
106 21.90 temperature 15.0 720 < th dose dependent rect. 20 10
110 21.90 temperature 15.0 720 < th dose dependent rect. 4 16
111 21.90 temperature 15.0 720 < th dose dependent rect. 19 16
117 21.90 temperature 15.0 720 < th dose dependent rect. 5 19
124 21.90 temperature 15.0 720 < th dose dependent rect. 21 22
129 21.91 temperature 15.0 90 > th dose independent sin 12 NA
130 21.91 temperature 15.0 90 > th dose independent sin 21 NA
132 21.91 temperature 15.0 90 > th dose independent sin 0 NA
136 21.91 temperature 15.0 90 > th dose independent no NA NA
138 21.91 temperature 15.0 90 < th dose independent sin 7 NA
190 21.91 temperature 15.0 90 < th dose independent no NA NA
193 21.91 temperature 15.0 1440 < th dose independent rect. 5 1
195 21.91 temperature 15.0 1440 < th dose independent rect. 9 1
198 21.91 atmosphere 1015.0 1440 > th dose independent rect. 1 1
203 21.91 precipitation 0.1 1440 > th dose independent rect. 9 1
238 21.91 temperature 15.0 720 < th dose independent rect. 22 4
336 21.91 temperature 15.0 270 < th dose independent rect. 24 10
607 21.91 temperature 15.0 1440 > th dose independent rect. 8 20
792 21.91 temperature 15.0 90 < th dose dependent sin 7 NA
842 21.91 temperature 15.0 90 < th dose dependent no NA NA
844 21.91 temperature 15.0 1440 < th dose dependent rect. 5 1
846 21.91 temperature 15.0 1440 < th dose dependent rect. 9 1
849 21.91 atmosphere 1015.0 1440 > th dose dependent rect. 1 1
852 21.91 precipitation 0.1 1440 > th dose dependent rect. 9 1
990 21.91 temperature 15.0 270 < th dose dependent rect. 24 10