Os06g0676600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os06g0676600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.97 | 0.348 | 9.2 | 0.754 | 1.22 | 1.25 | -0.446 | -0.178 | 0.429 | 7.52 | 21.1 | 5087 | -- | -- |
| 55.01 | 0.345 | 9.19 | 0.802 | 1.21 | 1.27 | -0.444 | -- | 0.439 | 7.53 | 21.1 | 5092 | -- | -- |
| 55.52 | 0.347 | 9.2 | 0.742 | 1.22 | 1.26 | -- | -0.168 | 0.426 | 7.54 | 21.1 | 5091 | -- | -- |
| 55.54 | 0.347 | 9.19 | 0.778 | 1.22 | 1.28 | -- | -- | 0.438 | 7.55 | 21.1 | 5092 | -- | -- |
| 131.36 | 0.534 | 9.22 | 0.763 | -- | 1.25 | -- | -0.221 | 0.471 | -- | 21.2 | 4292 | -- | -- |
| 88.5 | 0.441 | 9.1 | 1.6 | 1.2 | -- | -0.509 | -- | 0.85 | 7.39 | -- | -- | -- | -- |
| 89.2 | 0.442 | 9.1 | 1.58 | 1.2 | -- | -- | -- | 0.851 | 7.42 | -- | -- | -- | -- |
| 131.43 | 0.534 | 9.22 | 0.831 | -- | 1.27 | -- | -- | 0.457 | -- | 21.1 | 4320 | -- | -- |
| 56.33 | 0.35 | 9.21 | -- | 1.21 | 1.58 | -- | -- | 0.333 | 7.5 | 18.78 | 28477 | -- | -- |
| 165.78 | 0.602 | 9.13 | 1.6 | -- | -- | -- | -- | 0.87 | -- | -- | -- | -- | -- |
| 155.33 | 0.583 | 9.14 | -- | 1.21 | -- | -- | -- | 0.675 | 7.33 | -- | -- | -- | -- |
| 133.5 | 0.538 | 9.23 | -- | -- | 1.57 | -- | -- | 0.317 | -- | 18.5 | 28716 | -- | -- |
| 233.58 | 0.713 | 9.17 | -- | -- | -- | -- | -- | 0.693 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.21 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 4 | 52.79 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 5 | 52.79 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 7 | 52.94 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 13 | 53.04 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 28 | 53.17 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 31 | 53.26 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 32 | 53.26 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 33 | 53.29 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 34 | 53.32 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 3 |
| 38 | 53.39 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 39 | 53.41 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 40 | 53.41 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 21 | 13 |
| 41 | 53.42 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 20 | 15 |
| 45 | 53.44 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 21 |
| 49 | 53.45 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 18 | 14 |
| 63 | 53.54 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 87 | 53.79 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 88 | 53.82 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 22 |
| 104 | 53.92 | temperature | 30.0 | 720 | < th | dose dependent | sin | 9 | NA |
| 106 | 53.92 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 11 |
| 112 | 53.93 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 18 | 22 |
| 120 | 53.98 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 24 | 16 |
| 127 | 53.99 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 128 | 53.99 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 14 |
| 134 | 54.00 | temperature | 15.0 | 720 | > th | dose dependent | sin | 9 | NA |
| 141 | 54.02 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 8 |
| 233 | 54.19 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 264 | 54.23 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 18 |
| 269 | 54.26 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 5 | 10 |
| 272 | 54.27 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 5 | 10 |
| 273 | 54.27 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 24 | 15 |
| 287 | 54.29 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 2 | 13 |
| 294 | 54.29 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 19 | 12 |
| 325 | 54.33 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 334 | 54.33 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 18 |
| 341 | 54.35 | radiation | 1.0 | 14400 | < th | dose dependent | sin | 4 | NA |
| 371 | 54.38 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 19 | 12 |
| 379 | 54.39 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 431 | 54.42 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 22 | 9 |
| 524 | 54.52 | radiation | 1.0 | 43200 | < th | dose dependent | sin | 11 | NA |
| 656 | 54.64 | wind | 9.0 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 718 | 54.68 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 5 | 2 |
| 738 | 54.68 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 10 | 22 |
| 800 | 54.72 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 22 |
| 818 | 54.73 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 20 |
| 869 | 54.76 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 7 | 23 |
| 873 | 54.77 | temperature | 20.0 | 43200 | < th | dose dependent | sin | 7 | NA |
| 892 | 54.78 | radiation | 1.0 | 14400 | < th | dose dependent | no | NA | NA |
| 936 | 54.79 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 3 | 22 |