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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0676400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.09 (0.0438) R2 : 0.0927
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.57 (0.526) R2dE : 0.0918 R2E : 0.0896
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.102 (0.0924) R2dN8 : 0.00315 R2N8 : 0.000957
σ : 0.824
deviance : 312.81
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 25.1
memory length : 28
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.94
open length of G : 0.57

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
305.91 0.822 3.13 -0.307 0.269 10.4 0.488 -48.6 0.0972 4.85 25.1 10 5.03 0.967
308.81 0.818 3.1 -0.0705 0.277 3.38 0.594 -- 0.0628 4.1 25.14 25 5.93 0.65
306.26 0.815 3.12 -0.305 0.284 11.1 -- -51.5 0.102 5.18 25.12 11 5.03 1.5
309.01 0.819 3.1 -0.0157 0.283 3.45 -- -- 0.0957 4.9 25.14 27 5.93 0.609
309.75 0.82 3.14 -0.418 -- 16.7 -- -83.8 0.108 -- 25.24 11 5.83 0.936
335.76 0.859 3.09 0.0202 0.37 -- 0.702 -- 0.0686 5.15 -- -- -- --
336.98 0.86 3.09 0.0204 0.376 -- -- -- 0.0655 5.33 -- -- -- --
312.82 0.824 3.1 -0.0116 -- 3.57 -- -- 0.0974 -- 25.1 29 5.94 0.574
308.8 0.818 3.09 -- 0.28 3.41 -- -- 0.0948 5.13 25.1 27 5.93 0.574
344.35 0.867 3.1 0.0332 -- -- -- -- 0.0748 -- -- -- -- --
336.99 0.859 3.09 -- 0.376 -- -- -- 0.0632 5.33 -- -- -- --
312.81 0.824 3.09 -- -- 3.57 -- -- 0.102 -- 25.1 28 5.94 0.57
344.38 0.866 3.1 -- -- -- -- -- 0.0711 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 309.39 temperature 25.0 10 > th dose dependent rect. 5 1
3 310.61 temperature 25.0 10 > th dose independent rect. 5 1
17 323.74 radiation 1.0 90 > th dose dependent rect. 18 12
18 324.10 temperature 20.0 10 < th dose independent rect. 9 12
22 324.59 radiation 1.0 90 > th dose dependent rect. 5 1
37 324.84 precipitation 0.1 270 > th dose independent rect. 3 15
41 325.02 temperature 25.0 90 < th dose dependent rect. 18 1
42 325.14 precipitation 0.1 270 > th dose dependent sin 3 NA
43 325.18 wind 5.0 270 > th dose independent rect. 6 2
56 325.28 wind 5.0 270 > th dose dependent rect. 5 3
62 325.52 precipitation 0.1 270 > th dose dependent rect. 3 15
73 325.76 temperature 20.0 10 < th dose independent rect. 19 1
82 325.87 temperature 20.0 10 < th dose independent rect. 15 6
94 326.10 temperature 25.0 10 < th dose dependent rect. 18 2
97 326.10 precipitation 0.1 270 > th dose dependent rect. 20 22
106 326.18 precipitation 0.1 270 > th dose dependent rect. 4 6
109 326.20 temperature 15.0 90 > th dose dependent rect. 5 1
111 326.21 precipitation 0.1 90 > th dose independent rect. 7 1
117 326.21 precipitation 0.1 90 > th dose dependent rect. 7 1
123 326.22 precipitation 0.1 270 > th dose independent sin 2 NA
126 326.27 wind 5.0 10 > th dose independent rect. 7 2
128 326.27 precipitation 0.1 270 > th dose independent rect. 4 6
129 326.27 wind 5.0 10 > th dose dependent rect. 7 2
149 326.35 wind 1.0 10 > th dose independent rect. 1 6
197 326.60 temperature 20.0 10 < th dose dependent rect. 9 12
200 326.65 radiation 1.0 90 > th dose independent rect. 18 12
203 326.69 radiation 1.0 90 > th dose independent rect. 6 11
212 326.84 wind 7.0 1440 < th dose independent rect. 1 7
215 326.86 humidity 90.0 90 > th dose independent rect. 5 1
225 326.95 wind 3.0 30 > th dose dependent rect. 12 1
229 327.01 wind 9.0 1440 < th dose independent rect. 22 3
230 327.01 wind 9.0 1440 < th dose independent rect. 21 5
264 327.20 atmosphere 1015.0 90 < th dose dependent rect. 5 1
266 327.23 precipitation 0.1 270 > th dose independent rect. 18 1
267 327.23 precipitation 0.1 270 > th dose dependent rect. 18 1
282 327.36 wind 9.0 720 > th dose independent rect. 22 12
287 327.39 humidity 80.0 90 > th dose dependent rect. 5 1
288 327.40 wind 9.0 720 > th dose dependent rect. 21 13
291 327.44 temperature 15.0 270 > th dose independent rect. 9 11
321 327.61 atmosphere 1015.0 1440 < th dose independent rect. 1 7
323 327.63 precipitation 0.1 270 > th dose independent rect. 17 21
334 327.67 wind 5.0 30 > th dose independent rect. 12 1
340 327.70 wind 9.0 30 < th dose independent rect. 13 23
345 327.73 wind 9.0 1440 < th dose independent rect. 21 8
350 327.75 radiation 1.0 270 < th dose independent rect. 22 22
351 327.76 wind 5.0 10 < th dose independent sin 6 NA
361 327.80 temperature 25.0 90 < th dose dependent rect. 8 13
369 327.86 precipitation 0.1 270 > th dose independent rect. 17 18
375 327.87 radiation 1.0 90 > th dose independent rect. 5 1
382 327.90 radiation 1.0 270 > th dose independent rect. 17 22
406 327.94 wind 7.0 1440 < th dose independent rect. 5 3
439 328.04 precipitation 0.1 270 > th dose dependent rect. 17 21
450 328.08 humidity 90.0 90 > th dose independent rect. 1 5
454 328.10 wind 3.0 90 < th dose independent rect. 5 1
472 328.16 radiation 10.0 90 < th dose independent rect. 5 1
475 328.16 radiation 10.0 10 < th dose dependent rect. 8 1
485 328.17 temperature 25.0 10 < th dose dependent rect. 16 5
508 328.22 precipitation 0.1 270 > th dose dependent rect. 17 18
513 328.23 wind 1.0 10 > th dose independent rect. 17 14
514 328.24 wind 5.0 270 > th dose independent rect. 22 11
527 328.27 temperature 25.0 270 < th dose independent rect. 16 3
531 328.28 humidity 60.0 30 > th dose dependent rect. 12 1
535 328.30 radiation 20.0 10 < th dose dependent rect. 5 23
543 328.31 temperature 10.0 90 > th dose dependent rect. 7 17
546 328.32 wind 7.0 270 < th dose independent rect. 9 11
547 328.32 wind 5.0 10 > th dose independent rect. 24 13
570 328.36 radiation 10.0 10 < th dose independent rect. 1 21
572 328.36 wind 5.0 90 < th dose dependent rect. 5 1
588 328.41 temperature 25.0 90 < th dose dependent rect. 11 10
590 328.41 temperature 10.0 10 > th dose dependent rect. 7 18
594 328.43 wind 5.0 270 < th dose independent rect. 20 18
600 328.44 wind 5.0 30 > th dose independent rect. 24 9
607 328.45 temperature 20.0 10 < th dose independent rect. 6 15
608 328.45 wind 1.0 10 > th dose independent rect. 1 20
647 328.52 atmosphere 1015.0 720 < th dose independent rect. 1 19
671 328.56 temperature 15.0 1440 > th dose independent rect. 6 16
675 328.56 precipitation 0.1 270 > th dose dependent rect. 20 18
676 328.57 wind 5.0 10 > th dose independent sin 6 NA
682 328.58 precipitation 0.1 270 > th dose independent no NA NA
683 328.58 precipitation 0.1 270 < th dose independent no NA NA
691 328.58 precipitation 0.1 270 > th dose independent rect. 13 22
692 328.58 precipitation 0.1 270 > th dose independent rect. 9 23
695 328.58 precipitation 0.1 270 < th dose dependent no NA NA
699 328.59 atmosphere 1000.0 90 > th dose independent rect. 24 21
700 328.59 precipitation 0.1 270 > th dose independent rect. 7 23
706 328.59 wind 3.0 720 > th dose dependent rect. 21 14
715 328.61 radiation 10.0 10 < th dose independent rect. 17 17
731 328.63 precipitation 0.1 270 > th dose dependent no NA NA
743 328.63 wind 5.0 270 > th dose dependent rect. 22 11
746 328.63 precipitation 0.1 270 > th dose dependent rect. 13 22
747 328.63 precipitation 0.1 270 > th dose dependent rect. 9 23
753 328.64 temperature 10.0 90 > th dose independent rect. 5 1
755 328.64 temperature 30.0 90 < th dose independent rect. 5 1
756 328.64 humidity 50.0 90 > th dose independent rect. 5 1
759 328.64 atmosphere 995.0 90 > th dose independent rect. 5 1
760 328.64 atmosphere 1010.0 90 < th dose independent rect. 5 1
768 328.64 temperature 10.0 90 > th dose independent rect. 6 23
773 328.64 precipitation 0.1 270 > th dose dependent rect. 7 23
814 328.71 radiation 10.0 10 < th dose independent rect. 5 23
819 328.73 precipitation 0.1 90 < th dose independent rect. 5 1
822 328.73 precipitation 0.1 90 < th dose dependent rect. 5 1
829 328.75 wind 5.0 270 < th dose independent rect. 20 15
837 328.76 humidity 80.0 90 > th dose dependent rect. 1 5
854 328.79 atmosphere 1000.0 30 > th dose independent rect. 24 23
856 328.79 precipitation 0.1 270 > th dose dependent rect. 20 15
865 328.80 wind 5.0 10 < th dose independent rect. 21 18
868 328.80 wind 1.0 10 > th dose independent rect. 1 22
876 328.81 temperature 15.0 720 > th dose independent rect. 9 2
880 328.81 precipitation 0.1 270 > th dose dependent rect. 7 11
884 328.82 wind 3.0 270 > th dose independent rect. 3 16
893 328.83 humidity 80.0 10 > th dose independent rect. 1 9
895 328.83 radiation 10.0 90 < th dose independent rect. 17 13
910 328.85 radiation 10.0 10 < th dose independent rect. 1 10
924 328.86 atmosphere 1000.0 30 > th dose independent rect. 17 14
929 328.87 wind 7.0 90 < th dose independent rect. 11 10
939 328.88 atmosphere 1000.0 10 > th dose independent rect. 1 20
943 328.88 radiation 40.0 90 < th dose dependent rect. 24 21
963 328.90 radiation 10.0 90 < th dose dependent rect. 1 20
966 328.91 wind 9.0 90 < th dose independent rect. 17 13
967 328.91 radiation 10.0 10 < th dose independent rect. 17 15
975 328.92 radiation 40.0 90 < th dose dependent rect. 5 1
980 328.93 wind 5.0 30 > th dose independent rect. 15 22
988 328.95 temperature 10.0 90 > th dose independent rect. 6 11
989 328.95 atmosphere 1015.0 90 < th dose independent rect. 6 11
990 328.95 temperature 10.0 90 > th dose independent rect. 17 13
1000 328.96 radiation 1.0 90 < th dose independent rect. 8 3