Os06g0676000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Integral membrane protein OsNramp3 (Fragment).
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Os06g0676000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Integral membrane protein OsNramp3 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.82 | 0.265 | 10.1 | 0.205 | 0.889 | 1.5 | -0.423 | 0.0787 | 0.161 | 3.64 | 25.9 | 1208 | -- | -- |
| 31.81 | 0.263 | 10.1 | 0.219 | 0.897 | 1.5 | -0.432 | -- | 0.163 | 3.53 | 26 | 1157 | -- | -- |
| 32.32 | 0.265 | 10.1 | 0.215 | 0.879 | 1.51 | -- | 0.0971 | 0.168 | 3.78 | 26.09 | 1262 | -- | -- |
| 32.33 | 0.265 | 10.1 | 0.228 | 0.877 | 1.5 | -- | -- | 0.167 | 3.82 | 26.17 | 1280 | -- | -- |
| 37.87 | 0.287 | 10.1 | 0.415 | -- | 1.96 | -- | -1.21 | 0.178 | -- | 33.6 | 216 | -- | -- |
| 63.49 | 0.374 | 10.2 | -0.222 | 0.778 | -- | -0.305 | -- | -0.165 | 4 | -- | -- | -- | -- |
| 63.74 | 0.374 | 10.2 | -0.218 | 0.777 | -- | -- | -- | -0.163 | 4.06 | -- | -- | -- | -- |
| 39.05 | 0.291 | 10.1 | 0.221 | -- | 1.86 | -- | -- | 0.138 | -- | 32.58 | 239 | -- | -- |
| 33.55 | 0.27 | 10.1 | -- | 0.872 | 1.39 | -- | -- | 0.138 | 3.62 | 26.19 | 1183 | -- | -- |
| 96.63 | 0.459 | 10.2 | -0.186 | -- | -- | -- | -- | -0.143 | -- | -- | -- | -- | -- |
| 64.99 | 0.377 | 10.2 | -- | 0.773 | -- | -- | -- | -0.139 | 4.06 | -- | -- | -- | -- |
| 40.26 | 0.296 | 10.2 | -- | -- | 1.85 | -- | -- | 0.105 | -- | 33.09 | 233 | -- | -- |
| 97.54 | 0.461 | 10.2 | -- | -- | -- | -- | -- | -0.122 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.80 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 2 | 28.88 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 21 | 29.70 | temperature | 10 | 720 | > th | dose dependent | sin | 6 | NA |
| 23 | 29.76 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 38 | 30.06 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 77 | 30.77 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 84 | 30.85 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 94 | 30.98 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 8 |
| 101 | 31.00 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 6 |
| 117 | 31.04 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 151 | 31.12 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 18 |
| 161 | 31.14 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 14 |
| 188 | 31.20 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 17 |
| 196 | 31.21 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 16 |
| 197 | 31.22 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 246 | 31.30 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |
| 370 | 31.50 | temperature | 15 | 1440 | > th | dose dependent | sin | 11 | NA |
| 435 | 31.57 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 823 | 32.23 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 910 | 32.33 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |