Os06g0675700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to High pI alpha-glucosidase.
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Os06g0675700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to High pI alpha-glucosidase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 169.89 | 0.612 | 8.78 | -1.43 | 0.443 | -1.19 | 0.381 | -1.35 | -0.798 | 22.7 | 70.46 | 1227 | -- | -- |
| 172.22 | 0.611 | 8.81 | -1.59 | 0.38 | -1.33 | 0.673 | -- | -0.89 | 23 | 71.3 | 1192 | -- | -- |
| 170 | 0.607 | 8.77 | -1.42 | 0.409 | -1.2 | -- | -1.49 | -0.789 | 22.6 | 70.38 | 1202 | -- | -- |
| 173.71 | 0.614 | 8.81 | -1.63 | 0.38 | -1.35 | -- | -- | -0.86 | 22.7 | 72.52 | 1194 | -- | -- |
| 175.77 | 0.617 | 8.78 | -1.45 | -- | -1.44 | -- | -1.38 | -0.827 | -- | 71.27 | 1130 | -- | -- |
| 230.75 | 0.712 | 8.77 | -1.34 | 0.716 | -- | 0.902 | -- | -0.689 | 23.6 | -- | -- | -- | -- |
| 234.25 | 0.717 | 8.77 | -1.37 | 0.713 | -- | -- | -- | -0.692 | 23.5 | -- | -- | -- | -- |
| 179.14 | 0.623 | 8.8 | -1.64 | -- | -1.54 | -- | -- | -0.868 | -- | 72.68 | 1133 | -- | -- |
| 241.35 | 0.724 | 8.77 | -- | 0.479 | -1.12 | -- | -- | -0.691 | 22.7 | 73.65 | 1223 | -- | -- |
| 266.14 | 0.762 | 8.76 | -1.35 | -- | -- | -- | -- | -0.685 | -- | -- | -- | -- | -- |
| 283.86 | 0.788 | 8.74 | -- | 0.698 | -- | -- | -- | -0.54 | 23.4 | -- | -- | -- | -- |
| 247.47 | 0.733 | 8.75 | -- | -- | -1.33 | -- | -- | -0.643 | -- | 74 | 1084 | -- | -- |
| 314.41 | 0.828 | 8.72 | -- | -- | -- | -- | -- | -0.535 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 166.66 | wind | 5 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 2 | 167.08 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 5 |
| 3 | 167.14 | wind | 9 | 43200 | < th | dose dependent | rect. | 1 | 5 |
| 52 | 171.04 | wind | 3 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 64 | 171.35 | wind | 3 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 67 | 171.54 | wind | 3 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 76 | 172.60 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 3 |
| 84 | 173.14 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 3 |
| 93 | 173.85 | humidity | 70 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 108 | 174.27 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 22 |
| 115 | 174.46 | radiation | 20 | 4320 | > th | dose independent | rect. | 6 | 3 |
| 151 | 174.71 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 18 |
| 153 | 174.72 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 16 |
| 157 | 174.74 | humidity | 70 | 1440 | < th | dose independent | rect. | 10 | 10 |
| 158 | 174.74 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 11 |
| 231 | 175.37 | humidity | 70 | 1440 | > th | dose independent | rect. | 6 | 19 |
| 237 | 175.37 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 241 | 175.39 | humidity | 70 | 1440 | > th | dose independent | rect. | 23 | 21 |
| 256 | 175.41 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |
| 261 | 175.41 | humidity | 70 | 1440 | > th | dose independent | rect. | 2 | 23 |
| 278 | 175.43 | humidity | 70 | 1440 | < th | dose independent | rect. | 15 | 22 |
| 280 | 175.44 | humidity | 70 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 282 | 175.44 | humidity | 70 | 1440 | > th | dose independent | rect. | 3 | 17 |
| 295 | 175.45 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 309 | 175.55 | humidity | 70 | 1440 | < th | dose independent | sin | 20 | NA |
| 329 | 175.59 | temperature | 30 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 330 | 175.60 | humidity | 70 | 1440 | > th | dose independent | sin | 20 | NA |
| 331 | 175.64 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 333 | 175.68 | radiation | 40 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 352 | 175.74 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 353 | 175.79 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 362 | 175.93 | radiation | 1 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 381 | 176.10 | humidity | 70 | 1440 | < th | dose independent | no | NA | NA |
| 460 | 176.31 | humidity | 60 | 1440 | > th | dose dependent | rect. | 18 | 22 |
| 502 | 176.67 | radiation | 20 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 526 | 176.75 | radiation | 30 | 4320 | < th | dose dependent | rect. | 7 | 3 |
| 551 | 176.86 | wind | 3 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 561 | 176.93 | radiation | 10 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 596 | 177.19 | humidity | 60 | 1440 | > th | dose dependent | rect. | 23 | 22 |
| 629 | 177.38 | radiation | 1 | 4320 | > th | dose dependent | rect. | 7 | 3 |
| 636 | 177.43 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 19 |
| 643 | 177.46 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 19 |
| 667 | 177.52 | humidity | 60 | 1440 | > th | dose dependent | rect. | 6 | 23 |
| 671 | 177.53 | humidity | 60 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 674 | 177.55 | temperature | 30 | 14400 | > th | dose independent | rect. | 18 | 19 |
| 675 | 177.55 | humidity | 60 | 1440 | > th | dose dependent | no | NA | NA |
| 676 | 177.55 | humidity | 60 | 1440 | > th | dose dependent | rect. | 2 | 23 |
| 680 | 177.56 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 712 | 177.74 | temperature | 30 | 14400 | > th | dose dependent | rect. | 11 | 2 |
| 719 | 177.76 | temperature | 30 | 14400 | < th | dose independent | rect. | 23 | 14 |
| 732 | 177.78 | temperature | 30 | 14400 | < th | dose independent | rect. | 2 | 11 |
| 779 | 177.89 | temperature | 30 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 794 | 177.92 | temperature | 30 | 14400 | > th | dose dependent | rect. | 11 | 4 |
| 845 | 178.12 | temperature | 30 | 14400 | > th | dose dependent | rect. | 11 | 8 |
| 914 | 178.21 | humidity | 90 | 1440 | < th | dose dependent | rect. | 18 | 21 |
| 977 | 178.27 | temperature | 30 | 14400 | > th | dose dependent | rect. | 17 | 23 |