Os06g0675600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to GRAB2 protein.
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Os06g0675600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to GRAB2 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 190.88 | 0.649 | 5.88 | 0.385 | 1.14 | -2.78 | -0.614 | -6.68 | 0.699 | 10 | 1.163 | 27211 | -- | -- |
| 254.45 | 0.743 | 5.64 | 0.742 | 1.15 | -2.13 | -0.355 | -- | 1.02 | 9.88 | 3.38 | 30078 | -- | -- |
| 192.08 | 0.645 | 5.88 | 0.367 | 1.17 | -2.76 | -- | -6.65 | 0.695 | 10 | 1.15 | 27240 | -- | -- |
| 210.42 | 0.676 | 5.54 | 1.8 | 0.923 | -2.91 | -- | -- | 1.43 | 10.2 | 2.148 | 29939 | -- | -- |
| 254.21 | 0.743 | 5.9 | 0.516 | -- | -2.97 | -- | -6.88 | 0.779 | -- | 1.147 | 29872 | -- | -- |
| 387.44 | 0.923 | 5.77 | 0.82 | 1.35 | -- | -0.0871 | -- | 0.319 | 10.3 | -- | -- | -- | -- |
| 387.47 | 0.922 | 5.77 | 0.816 | 1.35 | -- | -- | -- | 0.319 | 10.3 | -- | -- | -- | -- |
| 256.93 | 0.747 | 5.53 | 2.26 | -- | -3.3 | -- | -- | 1.55 | -- | 2.06 | 31300 | -- | -- |
| 283.85 | 0.785 | 5.58 | -- | 1.01 | -2.41 | -- | -- | 1.18 | 10.1 | 3.445 | 28484 | -- | -- |
| 497.82 | 1.04 | 5.81 | 0.796 | -- | -- | -- | -- | 0.316 | -- | -- | -- | -- | -- |
| 405.03 | 0.941 | 5.79 | -- | 1.34 | -- | -- | -- | 0.228 | 10.2 | -- | -- | -- | -- |
| 342.62 | 0.862 | 5.67 | -- | -- | -2.49 | -- | -- | 1.03 | -- | 3.5 | 28361 | -- | -- |
| 514.54 | 1.06 | 5.83 | -- | -- | -- | -- | -- | 0.227 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 195.15 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 21 |
| 7 | 195.55 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 23 |
| 8 | 195.57 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 21 |
| 31 | 195.92 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 23 |
| 34 | 195.97 | radiation | 1 | 43200 | < th | dose independent | sin | 10 | NA |
| 51 | 196.14 | radiation | 1 | 43200 | < th | dose independent | rect. | 4 | 15 |
| 52 | 196.14 | radiation | 1 | 43200 | < th | dose independent | rect. | 4 | 19 |
| 53 | 196.14 | radiation | 1 | 43200 | < th | dose independent | rect. | 4 | 21 |
| 61 | 196.15 | radiation | 1 | 43200 | < th | dose independent | rect. | 24 | 19 |
| 65 | 196.15 | radiation | 1 | 43200 | < th | dose independent | rect. | 22 | 21 |
| 72 | 196.15 | radiation | 1 | 43200 | < th | dose independent | rect. | 24 | 23 |
| 73 | 196.16 | radiation | 1 | 43200 | < th | dose independent | no | NA | NA |
| 114 | 196.21 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 23 |
| 116 | 196.22 | radiation | 1 | 43200 | > th | dose independent | sin | 10 | NA |
| 161 | 196.59 | radiation | 1 | 43200 | > th | dose independent | no | NA | NA |
| 162 | 196.59 | radiation | 1 | 43200 | > th | dose independent | rect. | 4 | 14 |
| 217 | 196.62 | radiation | 1 | 43200 | < th | dose independent | rect. | 4 | 7 |
| 230 | 196.64 | radiation | 1 | 43200 | < th | dose independent | rect. | 21 | 14 |
| 232 | 196.65 | radiation | 1 | 43200 | < th | dose independent | rect. | 24 | 11 |
| 244 | 196.66 | radiation | 1 | 43200 | > th | dose independent | rect. | 10 | 23 |
| 245 | 196.67 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 260 | 196.73 | radiation | 1 | 43200 | > th | dose independent | rect. | 4 | 7 |
| 346 | 197.05 | humidity | 70 | 43200 | > th | dose dependent | rect. | 17 | 10 |
| 349 | 197.06 | humidity | 70 | 43200 | > th | dose dependent | rect. | 14 | 15 |
| 380 | 197.10 | humidity | 70 | 43200 | > th | dose dependent | rect. | 16 | 12 |
| 381 | 197.11 | temperature | 30 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 393 | 197.20 | humidity | 70 | 43200 | > th | dose dependent | sin | 14 | NA |
| 415 | 197.42 | humidity | 80 | 43200 | > th | dose dependent | rect. | 20 | 7 |
| 418 | 197.44 | humidity | 70 | 43200 | > th | dose dependent | rect. | 10 | 20 |
| 424 | 197.49 | temperature | 30 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 483 | 197.74 | humidity | 80 | 43200 | > th | dose dependent | rect. | 21 | 4 |
| 492 | 197.79 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 496 | 197.80 | humidity | 70 | 43200 | > th | dose dependent | rect. | 17 | 22 |
| 498 | 197.85 | humidity | 70 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 519 | 197.96 | humidity | 70 | 43200 | > th | dose dependent | rect. | 20 | 23 |
| 522 | 197.98 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 544 | 198.10 | humidity | 70 | 43200 | > th | dose dependent | rect. | 14 | 22 |
| 556 | 198.16 | humidity | 80 | 43200 | > th | dose dependent | rect. | 20 | 13 |
| 577 | 198.28 | humidity | 70 | 43200 | > th | dose dependent | no | NA | NA |
| 584 | 198.33 | temperature | 25 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 586 | 198.37 | radiation | 1 | 43200 | < th | dose dependent | rect. | 15 | 15 |
| 619 | 198.58 | radiation | 1 | 43200 | < th | dose independent | rect. | 14 | 11 |
| 625 | 198.59 | radiation | 1 | 43200 | < th | dose independent | rect. | 14 | 8 |
| 627 | 198.59 | radiation | 1 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 638 | 198.63 | humidity | 70 | 43200 | > th | dose dependent | rect. | 23 | 23 |
| 658 | 198.70 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 11 |
| 666 | 198.71 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 11 |
| 772 | 199.07 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 9 |
| 773 | 199.07 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 13 |
| 774 | 199.07 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 15 |
| 824 | 199.14 | radiation | 1 | 43200 | < th | dose dependent | sin | 12 | NA |
| 844 | 199.20 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 15 |
| 846 | 199.20 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 18 |
| 858 | 199.25 | radiation | 1 | 43200 | > th | dose independent | rect. | 9 | 9 |
| 952 | 199.47 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 9 |