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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0674100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.67 (0.0452) R2 : 0.841
β1 : 6.86 (0.175) R2dD : 0.632 R2D : 0.582
β2 : 0.912 (0.112) R2dC : 0.0239 R2C : -0.00484
β3 : -2.36 (0.234) R2dE : 0.0416 R2E : 0.125
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.8 (0.0973) R2dN8 : 0.164 R2N8 : 0.0344
σ : 0.84
deviance : 325.18
__
_____
C
peak time of C : 9.36
E
wheather : wind
threshold : 5.981
memory length : 2415
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
322.13 0.843 6.62 6.77 0.899 -2.87 0.415 -2.75 1.83 9.43 5.9 2412 -- --
324.23 0.839 6.67 6.85 0.911 -2.37 0.522 -- 1.79 9.46 5.97 2415 -- --
322.71 0.837 6.62 6.78 0.9 -2.89 -- -2.94 1.83 9.33 5.93 2415 -- --
325.18 0.84 6.67 6.86 0.912 -2.36 -- -- 1.8 9.36 5.981 2415 -- --
365.53 0.89 6.64 6.68 -- -3.36 -- -3.02 1.85 -- 5.8 2137 -- --
397.03 0.934 6.62 7.47 1.08 -- 0.179 -- 1.97 9.8 -- -- -- --
397.15 0.933 6.62 7.48 1.08 -- -- -- 1.97 9.78 -- -- -- --
369.76 0.896 6.68 6.81 -- -2.88 -- -- 1.81 -- 5.9 2137 -- --
1204.54 1.62 6.62 -- 1.27 -3.82 -- -- 1.95 8.98 7.497 7087 -- --
466.58 1.01 6.65 7.47 -- -- -- -- 1.97 -- -- -- -- --
1870.25 2.02 6.81 -- 1.07 -- -- -- 1.14 9.26 -- -- -- --
633.43 1.17 7.13 -- -- -5.86 -- -- -0.13 -- 7.452 47520 -- --
1936.72 2.05 6.84 -- -- -- -- -- 1.14 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 273.57 radiation 20 43200 > th dose dependent rect. 16 1
16 274.87 wind 9 43200 > th dose independent rect. 11 2
17 275.22 radiation 10 43200 < th dose independent rect. 17 13
18 276.21 wind 9 43200 > th dose dependent rect. 11 3
19 276.49 wind 9 43200 < th dose independent rect. 11 1
20 276.63 radiation 30 43200 < th dose independent rect. 16 15
23 277.01 radiation 10 43200 < th dose independent rect. 5 1
25 277.25 radiation 20 43200 > th dose dependent rect. 6 1
42 277.44 radiation 10 43200 < th dose independent rect. 24 6
48 277.52 radiation 10 43200 < th dose independent rect. 17 3
52 277.54 radiation 10 43200 < th dose independent rect. 17 6
53 277.54 radiation 10 43200 < th dose independent rect. 17 8
68 278.15 radiation 30 43200 < th dose independent rect. 16 4
70 278.20 radiation 30 43200 < th dose independent rect. 16 9
77 278.40 wind 9 43200 > th dose dependent rect. 11 6
82 278.56 radiation 30 43200 < th dose independent rect. 16 1
92 279.49 radiation 40 43200 < th dose independent rect. 5 3
95 279.83 radiation 40 43200 < th dose independent rect. 7 1
99 280.12 humidity 60 43200 < th dose independent rect. 10 1
104 280.32 radiation 40 43200 < th dose independent rect. 24 8
122 280.68 wind 9 43200 > th dose independent rect. 11 6
135 281.06 radiation 1 43200 > th dose independent rect. 4 1
145 281.06 radiation 1 43200 > th dose dependent rect. 4 1
163 282.09 radiation 1 43200 > th dose independent rect. 9 3
164 282.14 radiation 1 43200 < th dose independent rect. 10 2
166 282.14 radiation 1 43200 < th dose dependent rect. 10 2
171 282.41 wind 9 43200 > th dose dependent rect. 14 2
183 283.12 radiation 1 43200 < th dose independent rect. 8 5
187 283.21 radiation 1 43200 > th dose independent rect. 8 5
189 283.33 humidity 60 43200 < th dose independent rect. 7 5
228 284.37 wind 9 43200 > th dose independent rect. 14 3
231 284.60 radiation 1 43200 < th dose dependent rect. 8 5
232 284.68 wind 9 43200 < th dose independent rect. 11 6
240 284.97 temperature 20 43200 < th dose dependent rect. 22 1
249 285.80 temperature 20 43200 > th dose independent rect. 15 1
250 285.84 temperature 20 43200 < th dose independent rect. 14 3
252 286.00 radiation 10 43200 < th dose dependent rect. 4 1
253 286.05 humidity 60 43200 > th dose independent rect. 7 4
260 286.24 temperature 20 43200 < th dose independent rect. 15 1
272 286.54 radiation 10 43200 < th dose dependent rect. 24 5
299 286.98 radiation 10 43200 < th dose dependent rect. 19 10
309 287.25 wind 1 43200 < th dose dependent rect. 16 2
328 287.84 humidity 60 43200 < th dose dependent rect. 10 1
340 287.91 temperature 20 43200 < th dose dependent rect. 18 6
360 288.39 wind 9 43200 < th dose independent rect. 14 3
452 289.72 temperature 20 43200 < th dose dependent sin 17 NA
563 291.25 wind 1 43200 < th dose independent rect. 16 2
620 292.11 temperature 20 43200 < th dose dependent rect. 2 23
628 292.17 temperature 20 43200 < th dose dependent no NA NA
640 292.20 temperature 20 43200 < th dose dependent rect. 21 23
641 292.21 temperature 20 43200 < th dose dependent rect. 16 23
643 292.23 temperature 20 43200 < th dose dependent rect. 13 23
645 292.23 temperature 20 43200 < th dose dependent rect. 18 23
664 292.32 radiation 1 43200 < th dose dependent rect. 8 1
751 292.89 wind 1 43200 < th dose dependent rect. 18 13
793 293.33 temperature 20 43200 < th dose dependent rect. 2 1
816 293.64 wind 1 43200 < th dose independent rect. 16 4
820 293.69 radiation 1 43200 < th dose dependent rect. 6 1
825 293.73 wind 1 43200 > th dose independent rect. 16 2
857 294.13 temperature 20 43200 < th dose dependent sin 0 NA
954 295.54 temperature 20 43200 < th dose dependent rect. 7 1
965 295.62 temperature 20 43200 < th dose dependent rect. 6 7
967 295.63 temperature 20 43200 < th dose dependent rect. 5 12
970 295.64 temperature 20 43200 < th dose dependent rect. 5 10