Os06g0671700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os06g0671700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 185.03 | 0.639 | 7.23 | 1.97 | 4.61 | 2.8 | -0.34 | 0.174 | 0.184 | 18.1 | 20.55 | 37 | -- | -- |
| 183.83 | 0.636 | 7.22 | 1.95 | 4.61 | 2.54 | -0.354 | -- | 0.202 | 18 | 21.1 | 36 | -- | -- |
| 184.05 | 0.637 | 7.22 | 1.96 | 4.61 | 2.48 | -- | -0.188 | 0.203 | 18 | 21.15 | 29 | -- | -- |
| 184.08 | 0.636 | 7.22 | 1.95 | 4.61 | 2.53 | -- | -- | 0.202 | 18 | 21.15 | 29 | -- | -- |
| 1277.37 | 1.67 | 7.13 | 1.84 | -- | 1.31 | -- | -2.41 | 0.0592 | -- | 21.15 | 29 | -- | -- |
| 238.08 | 0.723 | 7.27 | 1.52 | 4.56 | -- | -0.452 | -- | -0.0117 | 18.2 | -- | -- | -- | -- |
| 238.58 | 0.723 | 7.28 | 1.53 | 4.55 | -- | -- | -- | -0.0134 | 18.2 | -- | -- | -- | -- |
| 1278.4 | 1.67 | 7.17 | 1.76 | -- | 2.64 | -- | -- | 0.0098 | -- | 19.34 | 18 | -- | -- |
| 276.58 | 0.779 | 7.29 | -- | 4.56 | 1.59 | -- | -- | -0.0778 | 18.1 | 21.15 | 29 | -- | -- |
| 1313.91 | 1.69 | 7.19 | 1.4 | -- | -- | -- | -- | -0.113 | -- | -- | -- | -- | -- |
| 300.02 | 0.81 | 7.31 | -- | 4.53 | -- | -- | -- | -0.183 | 18.2 | -- | -- | -- | -- |
| 1351.53 | 1.71 | 7.22 | -- | -- | 1.88 | -- | -- | -0.232 | -- | 18.3 | 37 | -- | -- |
| 1365.76 | 1.72 | 7.23 | -- | -- | -- | -- | -- | -0.269 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 179.41 | temperature | 30 | 90 | < th | dose dependent | rect. | 22 | 7 |
| 3 | 180.13 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 14 |
| 4 | 180.44 | temperature | 15 | 270 | > th | dose independent | rect. | 17 | 14 |
| 5 | 180.55 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 17 | 15 |
| 6 | 181.28 | temperature | 20 | 30 | > th | dose independent | rect. | 17 | 16 |
| 9 | 181.70 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 8 |
| 10 | 181.91 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 14 |
| 11 | 182.25 | temperature | 20 | 30 | > th | dose independent | rect. | 19 | 14 |
| 23 | 184.49 | temperature | 20 | 90 | < th | dose dependent | rect. | 11 | 16 |
| 26 | 184.73 | temperature | 20 | 90 | < th | dose dependent | rect. | 8 | 19 |
| 68 | 185.85 | temperature | 20 | 10 | < th | dose dependent | rect. | 4 | 23 |
| 76 | 186.01 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 13 | 9 |
| 81 | 186.05 | temperature | 15 | 1440 | > th | dose independent | rect. | 7 | 3 |
| 119 | 186.63 | temperature | 20 | 90 | > th | dose independent | rect. | 4 | 19 |
| 134 | 186.97 | temperature | 20 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 142 | 187.11 | temperature | 20 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 145 | 187.16 | temperature | 20 | 30 | < th | dose dependent | no | NA | NA |
| 147 | 187.16 | temperature | 20 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 148 | 187.16 | temperature | 20 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 153 | 187.17 | temperature | 20 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 154 | 187.17 | temperature | 20 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 156 | 187.18 | temperature | 20 | 30 | < th | dose dependent | rect. | 15 | 21 |
| 181 | 187.56 | temperature | 20 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 182 | 187.60 | temperature | 20 | 270 | > th | dose independent | rect. | 13 | 9 |
| 197 | 187.73 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 19 | 14 |
| 232 | 187.89 | temperature | 20 | 90 | < th | dose dependent | sin | 18 | NA |
| 270 | 188.25 | temperature | 20 | 10 | < th | dose dependent | sin | 17 | NA |
| 377 | 189.04 | temperature | 20 | 30 | > th | dose independent | rect. | 4 | 23 |
| 394 | 189.30 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 14 |
| 397 | 189.31 | temperature | 20 | 30 | < th | dose dependent | rect. | 22 | 14 |
| 454 | 189.83 | temperature | 15 | 270 | > th | dose independent | rect. | 1 | 22 |
| 516 | 190.94 | radiation | 10 | 4320 | < th | dose dependent | rect. | 24 | 5 |
| 521 | 191.03 | temperature | 20 | 90 | < th | dose independent | rect. | 9 | 18 |
| 555 | 191.56 | temperature | 15 | 10 | > th | dose dependent | sin | 10 | NA |
| 568 | 191.69 | humidity | 50 | 14400 | > th | dose independent | rect. | 5 | 4 |
| 603 | 192.15 | temperature | 20 | 1440 | < th | dose dependent | rect. | 2 | 17 |
| 610 | 192.22 | humidity | 50 | 43200 | > th | dose independent | rect. | 24 | 5 |
| 639 | 192.40 | temperature | 20 | 1440 | < th | dose dependent | sin | 2 | NA |
| 670 | 192.57 | wind | 7 | 270 | < th | dose independent | rect. | 8 | 19 |
| 692 | 192.71 | temperature | 15 | 270 | > th | dose independent | rect. | 6 | 23 |
| 705 | 192.80 | wind | 7 | 270 | < th | dose independent | rect. | 7 | 21 |
| 767 | 193.16 | humidity | 50 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 799 | 193.39 | temperature | 20 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 805 | 193.44 | temperature | 20 | 1440 | < th | dose dependent | no | NA | NA |
| 813 | 193.45 | temperature | 20 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 816 | 193.46 | temperature | 20 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 859 | 193.62 | wind | 7 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 861 | 193.62 | temperature | 20 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 901 | 193.75 | temperature | 20 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 906 | 193.79 | temperature | 20 | 30 | < th | dose dependent | sin | 8 | NA |
| 912 | 193.82 | radiation | 30 | 4320 | < th | dose independent | rect. | 24 | 7 |
| 991 | 194.24 | temperature | 15 | 1440 | > th | dose independent | rect. | 23 | 6 |