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Os06g0670300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Homeodomain-like containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.31 (0.0426) R2 : 0.646
β1 : -0.115 (0.3) R2dD : 0.000472 R2D : -0.0131
β2 : 1.38 (0.0778) R2dC : 0.253 R2C : 0.214
β3 : 1.4 (0.141) R2dE : 0.169 R2E : 0.176
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 5.87 (0.978) R2dD*E : 0.189 R2D*E : 0.241
γ1 : 0.432 (0.102) R2dN8 : 0.0411 R2N8 : 0.0205
σ : 0.612
deviance : 172.55
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C
peak time of C : 0.0963
E
wheather : temperature
threshold : 25.1
memory length : 5800
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 7.1
open length of G : 0.883

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
172.22 0.617 9.33 -0.159 1.4 1.23 -0.64 5.44 0.395 0.0608 24.95 5783 7.05 0.942
195.88 0.652 9.32 1.48 1.48 1.57 -0.381 -- 0.713 0.0178 25 5719 7.22 0.0512
172.55 0.612 9.31 -0.115 1.38 1.4 -- 5.87 0.432 0.0963 25.1 5800 7.1 0.883
187.81 0.638 9.18 1.45 1.39 1.87 -- -- 1.01 0.262 24.3 5831 6.73 0.59
293.59 0.798 9.26 0.192 -- 1.55 -- 5.5 0.522 -- 25.1 5807 7.13 0.928
335.51 0.859 9.23 1.04 1.27 -- -0.877 -- 0.508 23.8 -- -- -- --
338.85 0.862 9.23 1.08 1.28 -- -- -- 0.512 23.8 -- -- -- --
302.63 0.81 9.11 1.51 -- 1.76 -- -- 0.905 -- 25 5768 7.26 0.0354
246.81 0.732 9.14 -- 1.42 1.69 -- -- 0.927 23.7 24.4 5925 6.97 0.3
441.48 0.982 9.2 1.11 -- -- -- -- 0.528 -- -- -- -- --
369.31 0.899 9.26 -- 1.29 -- -- -- 0.392 23.9 -- -- -- --
364.69 0.889 9.11 -- -- 1.78 -- -- 0.796 -- 25.1 5794 7.32 0.217
474.16 1.02 9.23 -- -- -- -- -- 0.405 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 178.69 temperature 25.0 4320 < th dose independent rect. 7 1
2 180.95 temperature 25.0 4320 > th dose independent rect. 7 1
3 180.95 temperature 25.0 1440 > th dose dependent rect. 18 1
6 182.32 temperature 25.0 1440 > th dose dependent rect. 16 18
27 184.70 temperature 30.0 1440 < th dose independent rect. 11 2
32 185.18 temperature 25.0 1440 > th dose dependent rect. 1 8
54 186.30 temperature 30.0 1440 > th dose independent rect. 11 2
55 186.30 temperature 25.0 1440 > th dose dependent rect. 7 2
61 186.45 temperature 25.0 1440 > th dose dependent sin 9 NA
64 186.52 radiation 10.0 14400 > th dose independent rect. 17 13
66 186.56 precipitation 0.1 43200 > th dose dependent rect. 17 8
85 187.10 precipitation 0.1 43200 > th dose independent rect. 20 1
95 187.44 precipitation 0.1 43200 < th dose independent rect. 20 1
96 187.44 precipitation 0.1 43200 < th dose dependent rect. 20 1
100 187.53 temperature 30.0 1440 > th dose dependent rect. 13 1
111 187.93 radiation 10.0 14400 > th dose independent rect. 17 1
139 188.49 radiation 30.0 1440 < th dose independent rect. 15 17
143 188.64 precipitation 0.1 43200 > th dose independent rect. 17 5
150 188.78 precipitation 0.1 43200 < th dose independent rect. 17 5
151 188.78 precipitation 0.1 43200 < th dose dependent rect. 17 5
227 190.55 temperature 30.0 1440 < th dose independent rect. 4 9
229 190.55 temperature 30.0 1440 < th dose independent rect. 24 13
231 190.55 temperature 30.0 1440 < th dose independent rect. 20 17
250 190.84 radiation 30.0 1440 < th dose independent rect. 15 7
277 191.28 temperature 30.0 1440 < th dose independent rect. 16 21
283 191.39 precipitation 0.1 43200 > th dose dependent rect. 20 4
288 191.43 temperature 30.0 1440 > th dose independent rect. 16 22
312 191.50 radiation 30.0 1440 < th dose independent rect. 15 2
334 191.55 radiation 10.0 14400 < th dose independent rect. 16 1
350 191.71 radiation 30.0 1440 < th dose independent rect. 15 14
362 191.85 temperature 30.0 1440 < th dose independent rect. 16 1
385 191.95 radiation 30.0 1440 < th dose independent rect. 15 12
394 192.00 temperature 25.0 1440 > th dose dependent rect. 6 23
395 192.01 temperature 25.0 1440 > th dose dependent no NA NA
399 192.03 precipitation 0.1 43200 > th dose dependent rect. 8 10
423 192.11 temperature 25.0 1440 > th dose dependent rect. 23 23
465 192.27 precipitation 0.1 43200 > th dose dependent rect. 10 13
488 192.37 precipitation 0.1 43200 > th dose dependent rect. 8 15
536 192.59 precipitation 0.1 43200 > th dose dependent sin 18 NA
539 192.60 temperature 30.0 1440 > th dose independent rect. 16 1
546 192.62 radiation 40.0 1440 < th dose dependent rect. 16 14
561 192.69 temperature 30.0 1440 > th dose dependent sin 3 NA
659 193.18 radiation 20.0 14400 < th dose dependent rect. 16 1
752 193.66 radiation 10.0 14400 < th dose dependent rect. 15 3
826 194.10 radiation 20.0 14400 < th dose dependent rect. 16 5
833 194.14 precipitation 0.1 43200 < th dose independent rect. 17 2
834 194.14 precipitation 0.1 43200 < th dose dependent rect. 17 2
842 194.17 precipitation 0.1 43200 > th dose independent rect. 17 2
888 194.25 radiation 30.0 1440 > th dose independent rect. 15 17