Os06g0669600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os06g0669600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.46 | 0.207 | 11.5 | 0.817 | 0.461 | 0.387 | 0.0719 | -1.16 | 0.268 | 22.9 | 93.6 | 368 | -- | -- |
| 20.6 | 0.211 | 11.4 | 0.784 | 0.467 | 0.433 | 0.217 | -- | 0.262 | 22.7 | 93.77 | 356 | -- | -- |
| 19.47 | 0.206 | 11.5 | 0.818 | 0.461 | 0.388 | -- | -1.22 | 0.266 | 22.9 | 93.7 | 371 | -- | -- |
| 20.8 | 0.212 | 11.5 | 0.777 | 0.466 | 0.428 | -- | -- | 0.261 | 22.8 | 93.77 | 356 | -- | -- |
| 30.25 | 0.258 | 11.4 | 0.761 | -- | 0.314 | -- | -0.244 | 0.285 | -- | 88.99 | 7 | -- | -- |
| 22.02 | 0.22 | 11.5 | 0.796 | 0.439 | -- | 0.185 | -- | 0.225 | 23.4 | -- | -- | -- | -- |
| 22.16 | 0.22 | 11.5 | 0.788 | 0.438 | -- | -- | -- | 0.224 | 23.5 | -- | -- | -- | -- |
| 30.41 | 0.258 | 11.4 | 0.753 | -- | 0.3 | -- | -- | 0.281 | -- | 88.91 | 4 | -- | -- |
| 36.32 | 0.281 | 11.5 | -- | 0.477 | 0.405 | -- | -- | 0.19 | 22.7 | 92.2 | 387 | -- | -- |
| 34.19 | 0.273 | 11.4 | 0.8 | -- | -- | -- | -- | 0.228 | -- | -- | -- | -- | -- |
| 38.53 | 0.29 | 11.5 | -- | 0.447 | -- | -- | -- | 0.136 | 23.6 | -- | -- | -- | -- |
| 45.14 | 0.314 | 11.4 | -- | -- | 0.374 | -- | -- | 0.212 | -- | 89 | 4 | -- | -- |
| 51.07 | 0.334 | 11.5 | -- | -- | -- | -- | -- | 0.14 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.78 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 23 | 8 |
| 2 | 19.93 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 7 |
| 8 | 19.99 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 1 | 11 |
| 29 | 20.04 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 24 | 11 |
| 30 | 20.05 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 1 | 7 |
| 45 | 20.08 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 47 | 20.09 | wind | 5.0 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 50 | 20.10 | wind | 5.0 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 72 | 20.13 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 73 | 20.13 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 80 | 20.15 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 23 | 3 |
| 110 | 20.18 | humidity | 90.0 | 720 | > th | dose dependent | sin | 12 | NA |
| 152 | 20.27 | humidity | 90.0 | 30 | > th | dose dependent | sin | 4 | NA |
| 174 | 20.30 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 20 | 1 |
| 204 | 20.33 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 240 | 20.39 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 23 | 11 |
| 256 | 20.41 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 20 | 1 |
| 259 | 20.41 | humidity | 90.0 | 720 | > th | dose independent | rect. | 20 | 6 |
| 260 | 20.41 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 10 |
| 273 | 20.43 | wind | 1.0 | 270 | < th | dose dependent | rect. | 24 | 1 |
| 280 | 20.44 | humidity | 90.0 | 10 | < th | dose independent | rect. | 3 | 15 |
| 305 | 20.47 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 308 | 20.47 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 321 | 20.48 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 8 | 3 |
| 340 | 20.50 | wind | 1.0 | 90 | < th | dose independent | rect. | 24 | 1 |
| 342 | 20.50 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 22 | 8 |
| 358 | 20.51 | humidity | 90.0 | 10 | < th | dose independent | rect. | 3 | 6 |
| 361 | 20.51 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 8 |
| 373 | 20.52 | wind | 1.0 | 270 | < th | dose dependent | rect. | 22 | 1 |
| 377 | 20.52 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 5 | 6 |
| 396 | 20.53 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 24 | 8 |
| 442 | 20.57 | humidity | 90.0 | 720 | > th | dose independent | rect. | 23 | 3 |
| 507 | 20.60 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 5 | 23 |
| 519 | 20.61 | humidity | 90.0 | 720 | > th | dose dependent | no | NA | NA |
| 579 | 20.64 | atmosphere | 1005.0 | 720 | > th | dose dependent | rect. | 23 | 1 |
| 592 | 20.65 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 23 | 4 |
| 628 | 20.66 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 644 | 20.67 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 6 | 12 |
| 648 | 20.68 | temperature | 20.0 | 720 | > th | dose independent | rect. | 6 | 1 |
| 652 | 20.68 | radiation | 10.0 | 10 | < th | dose independent | rect. | 6 | 12 |
| 669 | 20.68 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 15 | 20 |
| 685 | 20.69 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 23 | 9 |
| 687 | 20.69 | temperature | 20.0 | 10 | > th | dose independent | rect. | 18 | 12 |
| 728 | 20.70 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 21 | 14 |
| 769 | 20.71 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 809 | 20.72 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 875 | 20.74 | humidity | 90.0 | 30 | > th | dose dependent | no | NA | NA |
| 910 | 20.74 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 11 | 21 |
| 939 | 20.75 | wind | 1.0 | 270 | < th | dose independent | rect. | 22 | 1 |
| 971 | 20.75 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 979 | 20.76 | humidity | 90.0 | 30 | > th | dose independent | rect. | 24 | 8 |
| 997 | 20.76 | wind | 1.0 | 30 | < th | dose dependent | rect. | 15 | 11 |