Os06g0669400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to FtsH protease (VAR2) (Zinc dependent protease).
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Os06g0669400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to FtsH protease (VAR2) (Zinc dependent protease).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.07 | 0.266 | 14.7 | 0.0547 | 0.516 | 0.643 | 0.218 | 0.493 | -0.351 | 13.1 | 23.95 | 2802 | -- | -- |
| 32.46 | 0.265 | 14.7 | 0.232 | 0.534 | 0.655 | 0.222 | -- | -0.288 | 13.1 | 23.7 | 2836 | -- | -- |
| 32.22 | 0.264 | 14.7 | 0.0485 | 0.516 | 0.641 | -- | 0.531 | -0.343 | 13.2 | 23.83 | 2792 | -- | -- |
| 32.62 | 0.266 | 14.6 | 0.24 | 0.523 | 0.66 | -- | -- | -0.286 | 13.2 | 23.8 | 2811 | -- | -- |
| 45.57 | 0.314 | 14.7 | 0.0399 | -- | 0.789 | -- | 0.61 | -0.344 | -- | 24.1 | 2479 | -- | -- |
| 48.1 | 0.325 | 14.7 | -0.0568 | 0.595 | -- | 0.288 | -- | -0.546 | 13.4 | -- | -- | -- | -- |
| 48.43 | 0.326 | 14.7 | -0.0469 | 0.595 | -- | -- | -- | -0.544 | 13.5 | -- | -- | -- | -- |
| 45.89 | 0.316 | 14.7 | 0.268 | -- | 0.824 | -- | -- | -0.276 | -- | 24.18 | 2478 | -- | -- |
| 33.93 | 0.271 | 14.7 | -- | 0.52 | 0.601 | -- | -- | -0.334 | 13.2 | 23.9 | 2809 | -- | -- |
| 70.2 | 0.392 | 14.7 | -0.0705 | -- | -- | -- | -- | -0.557 | -- | -- | -- | -- | -- |
| 48.49 | 0.326 | 14.7 | -- | 0.596 | -- | -- | -- | -0.539 | 13.5 | -- | -- | -- | -- |
| 47.53 | 0.321 | 14.7 | -- | -- | 0.756 | -- | -- | -0.325 | -- | 24.1 | 2472 | -- | -- |
| 70.33 | 0.391 | 14.7 | -- | -- | -- | -- | -- | -0.549 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.66 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 13 |
| 11 | 31.68 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 13 |
| 21 | 31.70 | temperature | 10 | 270 | > th | dose dependent | rect. | 24 | 22 |
| 42 | 31.77 | temperature | 15 | 1440 | > th | dose dependent | sin | 10 | NA |
| 48 | 31.78 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 8 |
| 65 | 31.81 | temperature | 30 | 1440 | < th | dose dependent | sin | 10 | NA |
| 66 | 31.81 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 8 |
| 291 | 32.08 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 20 |
| 381 | 32.19 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 483 | 32.29 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 485 | 32.29 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 3 |
| 503 | 32.31 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 594 | 32.38 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 3 |