Os06g0668400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TRAF-like domain containing protein.
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Os06g0668400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TRAF-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 184.7 | 0.639 | 3.04 | -0.233 | 0.0813 | 13.8 | 0.713 | -48.6 | -0.0541 | 20.5 | 0.1164 | 62 | -- | -- |
| 194.17 | 0.654 | 2.96 | 0.0661 | 0.0962 | -0.193 | 0.76 | -- | -0.0673 | 19.9 | 0.1164 | 62 | -- | -- |
| 183.6 | 0.631 | 3.02 | -0.266 | 0.0765 | 14.8 | -- | -53.1 | -0.0718 | 18.1 | 0.8936 | 62 | -- | -- |
| 186.58 | 0.636 | 2.95 | 0.00912 | 0.00588 | 2.88 | -- | -- | -0.0594 | 11.1 | 1.5 | 108 | -- | -- |
| 183.9 | 0.632 | 3.02 | -0.247 | -- | 16.9 | -- | -61.8 | -0.0615 | -- | 1.167 | 60 | -- | -- |
| 194.2 | 0.653 | 2.96 | 0.0634 | 0.0976 | -- | 0.761 | -- | -0.0669 | 19.9 | -- | -- | -- | -- |
| 195.57 | 0.655 | 2.96 | 0.0461 | 0.128 | -- | -- | -- | -0.0643 | 17.5 | -- | -- | -- | -- |
| 186.58 | 0.636 | 2.95 | 0.00907 | -- | 2.88 | -- | -- | -0.059 | -- | 1.5 | 108 | -- | -- |
| 186.19 | 0.636 | 2.96 | -- | 0.0829 | 2.71 | -- | -- | -0.0622 | 17.1 | 1.5 | 117 | -- | -- |
| 196.42 | 0.655 | 2.95 | 0.0419 | -- | -- | -- | -- | -0.0674 | -- | -- | -- | -- | -- |
| 195.62 | 0.654 | 2.96 | -- | 0.127 | -- | -- | -- | -0.0694 | 17.5 | -- | -- | -- | -- |
| 186.58 | 0.636 | 2.95 | -- | -- | 2.88 | -- | -- | -0.0603 | -- | 1.5 | 119 | -- | -- |
| 196.46 | 0.654 | 2.95 | -- | -- | -- | -- | -- | -0.0721 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 176.34 | wind | 1.0 | 270 | < th | dose dependent | rect. | 21 | 1 |
| 3 | 179.08 | atmosphere | 1000.0 | 720 | < th | dose dependent | rect. | 12 | 1 |
| 9 | 180.61 | wind | 1.0 | 270 | < th | dose independent | rect. | 21 | 1 |
| 14 | 181.03 | atmosphere | 1010.0 | 720 | < th | dose dependent | rect. | 12 | 1 |
| 21 | 181.88 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 14 | 7 |
| 27 | 182.04 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 15 | 4 |
| 51 | 182.40 | atmosphere | 1000.0 | 720 | < th | dose independent | rect. | 13 | 1 |
| 52 | 182.41 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 17 | 1 |
| 81 | 182.41 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 17 | 1 |
| 163 | 182.96 | precipitation | 0.1 | 90 | > th | dose dependent | sin | 19 | NA |
| 164 | 182.99 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 16 | 1 |
| 170 | 183.17 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 12 | 5 |
| 182 | 183.25 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 14 | 11 |
| 265 | 183.84 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 17 | 7 |
| 285 | 183.84 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 17 | 7 |
| 307 | 183.88 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 17 | 5 |
| 317 | 183.88 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 17 | 5 |
| 353 | 183.96 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 16 | 1 |
| 355 | 183.99 | atmosphere | 1000.0 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 409 | 184.21 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 434 | 184.39 | precipitation | 0.1 | 10 | > th | dose independent | sin | 20 | NA |
| 435 | 184.39 | precipitation | 0.1 | 10 | > th | dose dependent | sin | 20 | NA |
| 448 | 184.43 | atmosphere | 1000.0 | 1440 | < th | dose independent | rect. | 24 | 6 |
| 459 | 184.45 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 8 | 8 |
| 471 | 184.59 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 24 | 6 |
| 494 | 184.68 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 17 | 1 |
| 525 | 184.78 | atmosphere | 1000.0 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 570 | 185.03 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 3 | 3 |
| 572 | 185.04 | atmosphere | 1000.0 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 603 | 185.18 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 634 | 185.25 | wind | 1.0 | 90 | < th | dose independent | rect. | 13 | 1 |
| 648 | 185.29 | atmosphere | 1000.0 | 1440 | < th | dose dependent | rect. | 24 | 5 |
| 667 | 185.35 | atmosphere | 1005.0 | 1440 | < th | dose independent | rect. | 24 | 17 |
| 672 | 185.38 | atmosphere | 1005.0 | 1440 | > th | dose independent | rect. | 24 | 17 |
| 694 | 185.45 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 21 | 21 |
| 697 | 185.47 | atmosphere | 1010.0 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 725 | 185.53 | atmosphere | 1010.0 | 720 | < th | dose dependent | rect. | 6 | 11 |
| 746 | 185.61 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 16 | 2 |
| 752 | 185.62 | atmosphere | 1010.0 | 1440 | < th | dose dependent | rect. | 24 | 3 |
| 766 | 185.65 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 12 | 6 |
| 780 | 185.68 | atmosphere | 995.0 | 720 | > th | dose dependent | rect. | 8 | 8 |
| 787 | 185.70 | atmosphere | 1010.0 | 1440 | < th | dose dependent | rect. | 24 | 5 |
| 882 | 185.85 | atmosphere | 1000.0 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 890 | 185.86 | wind | 1.0 | 30 | < th | dose dependent | rect. | 13 | 1 |
| 892 | 185.86 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 16 | 2 |
| 912 | 185.89 | wind | 3.0 | 720 | < th | dose dependent | rect. | 13 | 1 |
| 937 | 185.93 | precipitation | 0.1 | 90 | > th | dose independent | sin | 20 | NA |
| 945 | 185.94 | atmosphere | 1005.0 | 1440 | > th | dose independent | sin | 3 | NA |
| 958 | 185.95 | atmosphere | 995.0 | 1440 | > th | dose dependent | rect. | 24 | 3 |
| 992 | 185.99 | atmosphere | 1005.0 | 1440 | < th | dose independent | sin | 4 | NA |