Os06g0667400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0667400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.25 | 0.263 | 9.09 | 0.324 | 0.397 | -0.654 | -0.618 | -2.41 | 0.222 | 10 | 19.4 | 5824 | -- | -- |
| 37 | 0.285 | 9.19 | 0.105 | 0.37 | -0.0715 | -0.622 | -- | 0.158 | 9.84 | 22 | 6620 | -- | -- |
| 32.53 | 0.266 | 9.08 | 0.297 | 0.4 | -0.691 | -- | -2.55 | 0.225 | 10.2 | 19.5 | 6378 | -- | -- |
| 36.89 | 0.283 | 9.19 | -0.00538 | 0.461 | -0.24 | -- | -- | 0.144 | 11.3 | 32.72 | 47520 | -- | -- |
| 42.14 | 0.302 | 9.08 | 0.276 | -- | -0.742 | -- | -2.72 | 0.226 | -- | 19.3 | 6980 | -- | -- |
| 37.29 | 0.286 | 9.18 | 0.124 | 0.391 | -- | -0.606 | -- | 0.178 | 10 | -- | -- | -- | -- |
| 38.72 | 0.291 | 9.18 | 0.101 | 0.394 | -- | -- | -- | 0.177 | 10.1 | -- | -- | -- | -- |
| 43.7 | 0.308 | 9.22 | -0.328 | -- | -0.412 | -- | -- | 0.0508 | -- | 33.4 | 47520 | -- | -- |
| 35.38 | 0.277 | 9.2 | -- | 0.399 | -0.262 | -- | -- | 0.102 | 10.2 | 33.01 | 47520 | -- | -- |
| 48.09 | 0.324 | 9.19 | 0.0956 | -- | -- | -- | -- | 0.177 | -- | -- | -- | -- | -- |
| 38.99 | 0.292 | 9.18 | -- | 0.393 | -- | -- | -- | 0.166 | 10.1 | -- | -- | -- | -- |
| 45 | 0.312 | 9.21 | -- | -- | -0.25 | -- | -- | 0.108 | -- | 33.11 | 47520 | -- | -- |
| 48.33 | 0.324 | 9.19 | -- | -- | -- | -- | -- | 0.166 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.49 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 3 |
| 4 | 29.80 | wind | 1 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 5 | 29.95 | wind | 1 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 7 | 30.05 | wind | 1 | 43200 | < th | dose independent | rect. | 9 | 4 |
| 11 | 30.21 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 7 |
| 16 | 30.28 | wind | 1 | 43200 | > th | dose independent | rect. | 9 | 4 |
| 20 | 30.36 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 23 | 30.47 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 4 |
| 31 | 30.57 | humidity | 60 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 35 | 30.61 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 38 | 30.66 | wind | 9 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 44 | 30.78 | wind | 9 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 51 | 30.85 | humidity | 80 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 56 | 30.86 | wind | 1 | 43200 | < th | dose independent | rect. | 8 | 18 |
| 58 | 30.88 | humidity | 90 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 61 | 30.91 | humidity | 80 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 62 | 30.91 | wind | 1 | 43200 | < th | dose dependent | rect. | 9 | 17 |
| 63 | 30.92 | wind | 3 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 64 | 30.93 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 22 | 5 |
| 67 | 30.93 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 21 | 7 |
| 71 | 30.94 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 22 | 5 |
| 83 | 30.96 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 84 | 30.96 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 85 | 30.96 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 95 | 30.97 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 108 | 30.98 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 118 | 30.98 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 18 |
| 119 | 30.98 | wind | 1 | 43200 | < th | dose dependent | rect. | 7 | 19 |
| 125 | 30.99 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 135 | 31.00 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 10 | 6 |
| 141 | 31.00 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 21 | 15 |
| 142 | 31.00 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 20 | 16 |
| 144 | 31.00 | humidity | 80 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 146 | 31.01 | humidity | 50 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 167 | 31.01 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 10 | 18 |
| 175 | 31.02 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 210 | 31.03 | atmosphere | 1015 | 43200 | < th | dose independent | sin | 9 | NA |
| 213 | 31.03 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 224 | 31.03 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 11 | 4 |
| 248 | 31.03 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 9 | 15 |
| 277 | 31.04 | atmosphere | 1015 | 43200 | > th | dose independent | sin | 8 | NA |
| 313 | 31.04 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 9 | 19 |
| 338 | 31.05 | atmosphere | 1015 | 43200 | < th | dose independent | no | NA | NA |
| 398 | 31.05 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 1 | 23 |
| 437 | 31.06 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 13 | 16 |
| 473 | 31.07 | humidity | 60 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 531 | 31.07 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 1 | 23 |
| 547 | 31.07 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 551 | 31.08 | atmosphere | 1015 | 43200 | > th | dose independent | no | NA | NA |
| 603 | 31.09 | atmosphere | 1015 | 43200 | < th | dose independent | sin | 3 | NA |
| 618 | 31.09 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 2 | 11 |
| 622 | 31.09 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 2 | 13 |
| 679 | 31.10 | atmosphere | 1015 | 43200 | > th | dose independent | sin | 2 | NA |
| 682 | 31.10 | atmosphere | 1015 | 43200 | < th | dose independent | sin | 22 | NA |
| 687 | 31.10 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 702 | 31.10 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 2 | 10 |
| 922 | 31.13 | humidity | 90 | 43200 | < th | dose dependent | rect. | 1 | 3 |
| 969 | 31.15 | humidity | 50 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 975 | 31.15 | humidity | 80 | 14400 | > th | dose independent | rect. | 24 | 6 |