Os06g0667300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os06g0667300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 226.29 | 0.707 | 3.7 | 1.66 | 0.873 | -0.853 | 0.288 | -3.26 | 0.611 | 2.83 | 34.98 | 1495 | -- | -- |
| 246.51 | 0.731 | 3.69 | 2.01 | 0.874 | -0.976 | 0.414 | -- | 0.682 | 2.75 | 30.67 | 1447 | -- | -- |
| 226.56 | 0.701 | 3.7 | 1.66 | 0.873 | -0.847 | -- | -3.26 | 0.611 | 2.85 | 35 | 1497 | -- | -- |
| 245.99 | 0.73 | 3.66 | 2.1 | 0.873 | -0.936 | -- | -- | 0.748 | 2.77 | 30.34 | 1448 | -- | -- |
| 259.24 | 0.75 | 3.67 | 1.74 | -- | -1.18 | -- | -3.49 | 0.67 | -- | 31.67 | 1783 | -- | -- |
| 281.77 | 0.787 | 3.71 | 1.98 | 0.817 | -- | 0.131 | -- | 0.542 | 2.85 | -- | -- | -- | -- |
| 281.83 | 0.786 | 3.71 | 1.97 | 0.818 | -- | -- | -- | 0.541 | 2.87 | -- | -- | -- | -- |
| 275.27 | 0.773 | 3.66 | 2.09 | -- | -1.27 | -- | -- | 0.775 | -- | 30 | 1963 | -- | -- |
| 358.06 | 0.881 | 3.73 | -- | 0.88 | -0.85 | -- | -- | 0.467 | 2.76 | 37 | 1488 | -- | -- |
| 320.47 | 0.836 | 3.71 | 2.01 | -- | -- | -- | -- | 0.562 | -- | -- | -- | -- | -- |
| 384.43 | 0.917 | 3.76 | -- | 0.857 | -- | -- | -- | 0.322 | 2.89 | -- | -- | -- | -- |
| 388.61 | 0.918 | 3.72 | -- | -- | -1.12 | -- | -- | 0.516 | -- | 35 | 1985 | -- | -- |
| 426.82 | 0.964 | 3.76 | -- | -- | -- | -- | -- | 0.34 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 217.10 | temperature | 25 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 2 | 217.11 | temperature | 25 | 14400 | > th | dose dependent | rect. | 7 | 5 |
| 6 | 217.21 | temperature | 25 | 14400 | > th | dose dependent | rect. | 23 | 15 |
| 13 | 217.28 | temperature | 25 | 14400 | > th | dose dependent | rect. | 23 | 13 |
| 18 | 217.32 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 13 |
| 47 | 217.49 | temperature | 25 | 14400 | > th | dose dependent | sin | 5 | NA |
| 75 | 217.71 | temperature | 30 | 14400 | < th | dose independent | rect. | 13 | 2 |
| 120 | 218.27 | temperature | 25 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 132 | 218.41 | radiation | 40 | 1440 | > th | dose dependent | rect. | 14 | 21 |
| 155 | 218.65 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 170 | 218.78 | temperature | 30 | 14400 | > th | dose independent | rect. | 13 | 2 |
| 191 | 218.88 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 7 |
| 206 | 218.96 | temperature | 25 | 14400 | > th | dose dependent | rect. | 6 | 20 |
| 242 | 219.06 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 273 | 219.14 | temperature | 25 | 14400 | > th | dose dependent | rect. | 13 | 23 |
| 310 | 219.32 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 320 | 219.40 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 336 | 219.51 | humidity | 80 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 356 | 219.64 | humidity | 80 | 43200 | > th | dose dependent | rect. | 9 | 3 |
| 359 | 219.67 | humidity | 80 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 386 | 219.92 | temperature | 30 | 14400 | < th | dose independent | rect. | 7 | 9 |
| 387 | 219.92 | temperature | 30 | 14400 | < th | dose independent | rect. | 5 | 11 |
| 391 | 219.92 | temperature | 30 | 14400 | < th | dose independent | rect. | 24 | 16 |
| 435 | 220.15 | temperature | 25 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 459 | 220.30 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 551 | 220.75 | temperature | 30 | 14400 | < th | dose independent | sin | 3 | NA |
| 560 | 220.80 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 582 | 220.95 | temperature | 25 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 598 | 220.95 | temperature | 10 | 14400 | > th | dose dependent | rect. | 13 | 2 |
| 603 | 220.96 | temperature | 25 | 14400 | > th | dose independent | rect. | 1 | 9 |
| 631 | 221.07 | temperature | 25 | 14400 | > th | dose independent | rect. | 24 | 11 |
| 633 | 221.09 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 637 | 221.12 | temperature | 30 | 14400 | > th | dose independent | sin | 3 | NA |
| 697 | 221.31 | temperature | 30 | 14400 | < th | dose independent | rect. | 9 | 12 |
| 716 | 221.33 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 10 |
| 753 | 221.39 | humidity | 80 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 763 | 221.44 | temperature | 30 | 14400 | < th | dose independent | rect. | 7 | 14 |
| 780 | 221.44 | temperature | 30 | 14400 | < th | dose independent | rect. | 22 | 23 |
| 781 | 221.44 | temperature | 30 | 14400 | < th | dose independent | rect. | 24 | 23 |
| 783 | 221.45 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |
| 874 | 221.53 | temperature | 30 | 14400 | < th | dose independent | rect. | 13 | 23 |
| 951 | 221.68 | temperature | 25 | 14400 | < th | dose independent | rect. | 3 | 7 |
| 964 | 221.69 | humidity | 70 | 14400 | > th | dose independent | rect. | 14 | 17 |
| 971 | 221.71 | humidity | 70 | 14400 | > th | dose independent | rect. | 14 | 9 |
| 973 | 221.71 | temperature | 25 | 14400 | < th | dose independent | rect. | 24 | 11 |
| 988 | 221.74 | humidity | 80 | 14400 | > th | dose dependent | rect. | 13 | 13 |
| 996 | 221.77 | temperature | 30 | 14400 | > th | dose independent | no | NA | NA |